FY 2003 Columbia Cascade proposal 200302200

Section 1. Administrative

Proposal titleDesign and Conduct Monitoring and Evaluation Associated With Reestablishment of Okanogan Basin Natural Production
Proposal ID200302200
OrganizationConfederated Tribes of the Colville Indian Reservation (CCT)
Proposal contact person or principal investigator
NameJoe Peone
Mailing addressP.O. Box 150 Nespelem, Washington 99155
Phone / email5096342110 / joe.peone@colvilletribes.com
Manager authorizing this projectJoe Peone
Review cycleColumbia Cascade
Province / SubbasinColumbia Cascade / Okanogan
Short descriptionThe CCT are currently proposing and implementing a focused array of salmon and steelhead propagation initiatives in an effort to rebuild anadromous, naturally-produced salmon runs and increase harvest opportunities. An M&E program is necessary.
Target speciesESA listed Steelhead, spring/summer and fall chinook.
Project location
LatitudeLongitudeDescription
Selected and various sites within the US side of the Okanogan subbasin - Columbia Cascade EcoProvince
47.9484 -119.8614 Wells Dam
48.36 -119.27 Omak Creek
48.929 -119.421 Zosels Mill Pond Dam
48.0985 -119.7334 Okanogan River
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA
RPA # 174 (see narrative)
RPA # 178 (see narrative)
RPA # 182 (see narrative)
RPA # 184 (see narrative

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS Action 182 NMFS The Action Agencies and NMFS shall work within regional priorities and congressional appropriations processes to establish and provide the appropriate level of FCRPS funding for studies to determine the reproductive success of hatchery fish relative to wild fish. At a minimum, two to four studies shall be conducted in each ESU. The Action Agencies shall work with the Technical Recovery Teams to identify the most appropriate populations or stocks for these studies no later than 2002. Studies will begin no later than 2003.
NMFS Action 184 NMFS The Action Agencies and NMFS shall work within regional prioritization and congressional appropriation processes to establish and provide the appropriate level of FCRPS funding for a hatchery research, monitoring, and evaluation program consisting of studies to determine whether hatchery reforms reduce the risk of extinction for Columbia River basin salmonids and whether conservation hatcheries contribute to recovery.

Section 2. Past accomplishments

YearAccomplishment
1998 S"Kaha Lake Sockeye spawing area assessment (Fisher, Peone CCT)
1999 Okanogan Focus Watwershed Project (CCT)
1998 Scotch Creek Wildlife Enhancement (CCT)
2000 CCT Hatchery - Facilities Design (CCT)
1999 Improve Anadromous Fish Habiat in Omak Creek (Fisher, CCT)
1999 Salmon Creek Restoration (Lyman, Peone CCT)
1999 Release of first experimental optimal conventional and semi-naturally reared spring chinook (Wolf at YKFP).
1999 Completed Ecosytem Diagnosis and Treatment models for spring chinook, fall chinook, coho, and steelhead in the Yakima and Klickitat Subbasins (Wolf at YKFP).
1999 Developed a new method of estimating smolt survival indices from Prosser to McNary Dam, and refined existing smolt passage estimator at the Chandler Juvenile Monitoring Facility (Wolf at YKFP).
1999 Demonstrated a relative hatchery-wild spring chinook smolt survival of 80% (Roza to McNary Dam). Demonstrated relatively high survival (>50%) for experimental hatchery spring chinook releases (acclimation pond to McNary Dam) (Wolf at YKFP)..
1999 Continued development of a localized broodstock adapted to the Yakima basin. Demonstrated relatively high survival (~50%) for locally collected, experimental hatchery coho releases (acclimation pond to McNary Dam)(Wolf at YKFP)..
1999 Completed genetic modeling demonstrating an increase in the effective population size for hatchery fish produced by factorial matings (Wolf at YKFP)..
1998 Identified the spawning distribution of returning coho in the Yakima River (Wolf at YKFP)..
1998 Demonstrated the ability to accelerate smoltification in experimental fall chinook to circumvent late spring temperature problems in lower Yakima River (Wolf)
1998 Monitoring prescriptions for 16 non-target taxa of concern have been developed and are being implemented to meet conservation objectives (Wolf at YKFP)..
1998 Reviewed work of YSIS conducted during 3 of 9 years of Species Interaction Studies
1998 Completed construction on the Cle Elem Hatchery and two sattellitte acclimation sites (Wolf at YKFP)
1998 A practical approach for assessing ecological risks associated with stocking anadromous salmonids was developed to facilitate decision making and direct monitoring efforts.
1997 Began broodstock collection of upper Yakima spring chinook at Roza Dam in 1997 and continued in 1998 using outlined genetic selection guidelines (Busack et al. 1997).

Section 3. Relationships to other projects

Project IDTitleDescription
200020033 Rehabilitate Instream and Riparian Habitat on the Similkameen and Okanogan Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
200126033 Okanogan Watershed Land and Water Rights Acquisition Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
200126008 Omak Creek Relocation Implementation Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
200000100 Fish Habitat Improvement; Omak Creek Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
200020042 Integrating Okanogan and Methow Watershed Data for Salmonid Restoration Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
Thermal Imaging (FLIR) Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
Zosel Dam Fish Passage Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
Physical Processes Method Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
Columbia Cascade EDT Analysis Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
Okanogan Steelhead Kelt Reconditioning Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution
20001300 Evaluation Sockeye Re-introduction into Skaha Lake Monitoring and Evaluation will provide information on outmigration timing, spawning location and timing, habitat productivity and conditions, river entry, passage and overall distribution

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2003 costSubcontractor
Objective 1. Coordinate the Monitoring and Evaluation of Okanogan Basin steelhead, spring and fall/summer chinook production with appropriate tribal, state, and federal management agencies and independent scientists in the Okanogan basin 1.Coordinate with the NMFS Science Center and the TRT staff (NMFS is providing in-kind services to this project to assist the Interior Columbia Basin Technical Recovery Teams’ (TRT) M&E guidance effort); 1 $6,240
2.Meet with tribal, state, and other federal agencies and independent scientists to discuss monitoring of steelhead spring and summer/fall chinook as related to ESA recovery planning and standardized M &E; 1 $6,240
3.Coordinate environmental analysis through National Environmental Policy Act with appropriate management and funding agencies prior to commencement of monitoring; 2 $6,240 Yes
4.Prepare the required ESA permit applications necessary to implement the project, and 1 $6,240
5.Provide annual ESA reports to NMFS which summarizes project activities by the date required. 3 $6,240
6. Develop Design, Implementation Plan, Work and Staffing plan and overall schedule (included data protocols, equipment, statistical methods) 1 $6,240 Yes
Objective 8. Comply to the required processes of BPA, ESA, USFWS, USFS, NMFS, CRITFC, CBFWA, ISRP, NWPPC, WDFW, NEPA, SEPA, TMDL, watershed assessments, master plans, subbasin plan reviews,etc 1.Complete the necessary permit applications and proposals 1 $6,240
2.Attend the necessary coordination, planning and consultation meetings 3 $6,240
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Objective 1 task 3 2004 2004 $0
task 5 2004 2005 $0
Objective 8, task 2 2004 2005 $0
Outyear budgets for Planning and Design phase
FY 2004FY 2005
$43,250$36,520

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2003 costSubcontractor
Objective 2. Monitor spawning activities of acclimated and natural steelhead, spring and fall chinook in the Okanogan basin 1.Document the number of redds and examine carcasses in selected mainstem and tributary systems (8 index sites); 5 $25,944
2.Conduct aerial surveys of spawning areas; mark redds from ground spawning surveys on aerial photographs 5 $37,440 Yes
3.Estimate survival to spawning and total egg deposition by species and reach in selected index areas; 5 $25,994
4.Collect and record length, sex, pre/post spawn mortality, coded wire tags, external marks, fin clips, and scales from carcasses examined on selected spawning grounds 5 $37,440 Yes
5.Summarize, analyze, report findings and examine management implications 5 $25,944
Objective 3. Estimate timing and survival of juvenile steelhead. spring and summer chinook salmon smolts at McNary, Bonneville and Wells Dam, and at the mouth of the Okangoan and at Zosel dam. 1.Use screw traps and snorkel techniques to estimate distribution and juvenile survival of steelhead and spring chinook at Omak Creek (Salmon Creek in out years). 5 $37,440 Yes
2. PIT tag natural juvenile Chinook at acclimation sites prior to release. PIT tag information will be essential in describing initial juvenile survival rates, emigration timing, and travel times. Ultimately, adult returns over Wells Dam and contribution 5 $37,440 Yes
3.Submit and extract tagging and detection files 5 $6,500
4.Estimate timing and minimum in-river survival from PIT tag detections at Wells Dam 5 $7,800
5.Establish a rotary screw trap to collect information of timing and survival at Cassimer bar at Wells pool 5 $25,994
6.Place a weir trap at mouth of Omak Creek to collect information of timing and survival 5 $25,944 Yes
7.At traps collect information on length frequency of returning adults, sex ratio, age at return via scale analysis, and hatchery: natural composition 5 $13,600
8.Determine relationships between environmental factors (flow, temperature) at residence and subsequent movements of smolts through downstream traps and dams 5 $5,188 Yes
9.Estimate smolt to adult survival and back calculate natural smolt production based on smolt tagging rates and ratios of tagged to untagged naturally produced returning adults. 5 $105,188
10.Summarize, analyze data, examine management implications and report 5 $5,188
Objective 4. Estimate juvenile salmonid abundance , distribution and rearing densities at index sites and selected reaches in the Okanogan basin 1.Snorkel survey established index sites and selected stream reaches. 5 $25,940 Yes
2.Isolate sites with block-nets and use depletion methods to estimate salmonid densities and report 5 $25,940
3.Compare abundance with redd counts. Calculate fish per redd numbers based on redd counts and monitoring numbers. Compare age structure, sex composition and brood year compositon with carcass collection from spawning ground suveys 5 $25,940 Yes
4.Remove the abundance monitoring temporary structures after adult migration is complete 5 $5,000
Objective 5. Estimate tribal harvest of adult salmon returning to Okanogan basin 1. Design and implement a selective fishing creel survey depending on season and locations of fisheries as determined by tribal authorities and report 5 $10,370
2.Conduct a creel survey below Chief Joseph Dam 5 $45,000 Yes
Objective 6. Determine age, growth, and life history characteristics of Chinook salmon in the Okanogan basin 1.Take scales from juvenile and adult salmon during trapping and spawning surveys 5 $10,370
2.Mount and press adult scales directly between labeled acetate sheets at time of sampling 5 $10,370
3.Determine the portion of unmarked adult salmon that are of hatchery and natural origin based on circuli counts from the scale focus to the first annuli 5 $10,370 Yes
4.Read scales and determine age, growth, life history characteristics and the years of freshwater and saltwater rearing of adult natural Chinook salmon 5 $10,370
5.Establish a scale station at Zosel Dam to collect information on the life history of unmarked Chinook passing Zosel Dam 3 $11,232 Yes
6.Summarize data, examine management implications and report findings 5 $10,370
Objective 7. Evaluate the performance of net traps, fish wheels, and other gear for selective, tribal ceremonial and subsistence harvest, and collection of spring Chinook, summer/fall Chinook, steelhead, and sockeye for brood stock collection, scientific 1.Determine the ability and calibration of Canadian trap nets and fish wheels to collect and sort spring Chinook, summer/fall Chinook, sockeye, and steelhead below Chief Joseph Dam, near the confluence of the Okanogan River, and in the Okanogan River. 2 $11,232 Yes
2.Determine the effects of trap nets and fish wheels on captured and released fish by conducting an analysis of fish condition pre and post release. 2 $10,370
3.Determine the suitability and acceptability of trap nets, fish wheels, and seines (Zosel Dam) for additional tribal harvest. Through user survey and other methods 2 $10,370
4.Determine the feasibility of using trap nets and fish wheels for collecting brood stock for artificial propagation programs and collecting M&E information by validation and calibration of test sets. 2 $10,370
5.Determine the feasibility of trap nets and fish wheels for collecting and passing summer/fall Chinook over Chief Joseph Dam by capturing and post release monitoring by radio telemetry and other methods. 2 $11,232 Yes
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Construction and Implementation phase
FY 2004FY 2005FY 2006FY 2007
$677,890$298,000$336,375$348,148

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2003 costSubcontractor
O&M is contained in the first year Implementation phase because the tasks themselves will be ongoing and iterative $0
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2003 costSubcontractor
Objective 9. Technology transfer 1.Share data with region wide data bases such as Streamnet, with co management agencies and independent scientists 5 $10,370
2.Compile, analyze, and present data cooperatively with co-managers summarizing project activities and compare to similar work proceeding in the Columbia River Basin. Provide quarterly and annual reports 5 $10,370
3.Present reports on project activities and findings at Annual BPA/CBFWA Project Review and other technical and policy forums 5 $10,370
Objective 10. Post processing of data, QA/QC, reports 1. Post processing and data QA/QC, database structure and archiving. 5 $11,232 Yes
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Monitoring and Evaluation phase
FY 2004FY 2005FY 2006FY 2007
$42,342$43,823$45,357$46,945

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2003 cost
Personnel FTE: 3.25 $101,400
Fringe @.24 $24,336
Supplies 8900 $8,900
Travel 5125 $5,125
Indirect .423 $42,892
Capital 229,000 Screw traps, redd capp, block nets, scale press, sampling trailer $229,000
NEPA 89000 $89,000
PIT tags # of tags: 2000 $4,500
Subcontractor 259999 $259,999
Other 5000 $5,000
$770,152
Total estimated budget
Total FY 2003 cost$770,152
Amount anticipated from previously committed BPA funds$0
Total FY 2003 budget request$770,152
FY 2003 forecast from 2002$0
% change from forecast0.0%
Cost sharing
OrganizationItem or service providedAmountCash or in-kind
Golder Associates Inc. Design Assistance and Literature Services $4,000 in-kind

Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Mar 1, 2002

Comment:

A response is needed that provides details of the monitoring plan. Effectiveness of a number of current and proposed management actions would be monitored under this project. A specific plan for each task needs to be described in addition to an overall plan. This is basically a proposal to develop a monitoring and evaluation plan. The response needs to take it to a detailed proposal that can be reviewed for scientific accuracy and precision.

This is very long rambling proposal, but in the end the "Proposal objectives, tasks, and methods" section is too brief to allow complete scientific review. For example, Objective 2."Monitor spawning activities of ....." should include detailed plans for site selection including detailed data collection protocols. "Index sites" are not adequate for a long-term monitoring program. Selections of sites for monitoring all fish and habitat characteristics must include a probabilistic (statistical) sampling procedure in order to make statistical inferences to the larger areas. The ISRP strongly recommends that the proponents consider using the "Oregon Plan" as a model. This model plan is being developed for implementation in the John Day Basin. Other acceptable plans have been implemented in Northern California for juvenile coho and some of the national parks, e.g., North Cascades and Olympic. Also see the proposals, ISRP reviews, and proponent responses for fish, habitat, and water quality monitoring in the Salmon subbasin (199107300, 199405000, and 28051). Also, see the Council's draft recommendations on monitoring in the John Day of the Columbia Plateau Province (199801600). The proponents are referred to the programmatic section of this report on Monitoring, the specific comments on Aquatic Monitoring and Evaluation.

The specific sample areas, methods, and sampling frequency and intensity (i.e., how many samples of what type where and when) and data collection protocols need to be specified or referenced for each of the objectives. The relationship between aerial surveys of spawning areas and ground spawning surveys should be clarified. What are the objectives, tasks, sampling methods and data collection protocols?

The response should include a letter of support from the NMFS Science Center and the TRT staff for the final proposal.

The response should include a more complete discussion of the objectives, methods, location, and sponsor for Project #1991000501- Monitoring and evaluation statistical support. What is the relationship of the present proposal to Project #1991000501?


Recommendation:
High Priority
Date:
May 17, 2002

Comment:

Possible cost share for spring chinook through pacific salmon recovery funds. Objective 2-7, spring chinook monitoring, is unnecessary and Objective 7 monitoring is already covered by project# 29042. The budget has been reduced for 2003 by $290,000. Provides personnel funding for projects 29042, and 29050. NMFS has identified this project as a BiOp project.
Recommendation:
Fund
Date:
Jun 7, 2002

Comment:

Fundable with high priority. The ISRP appreciates the effort put into providing an excellent response to our concerns. If funded, the project would serve as a model for other monitoring and evaluation projects in the Columbia Cascade Province and elsewhere. This project would provide a model for monitoring and evaluation in the Columbia Basin of Washington much as the monitoring and evaluation program in the John Day Subbasin is evolving as a model in the Columbia Basin of Oregon. Both propose the use the EMAP sampling protocols as a basis for probabilistic sampling of the subbasins.

The ISRP strongly recommends funding of this project. The response should be considered as an integral part of the initial proposal.


Recommendation:
Date:
Jul 19, 2002

Comment:

Statement of Potential Biological Benefit to ESU
Indirect benefit. Evaluation and monitoring of steelhead and fall/ summer chinook production (spawning, survival, abundance, distribution, rearing, life history) in the Okanagon Basin concurrent with proposed and implemented salmon and steelhead propagation initiatives. The project also includes monitoring and evaluation of tribal harvest and harvest methods.

Comments
The project outlines general monitoring of salmonids in the Okanagon basin along with the monitoring of propagation and reestablishment projects. This is important M&E that has the potential to increase our knowledge of runs in the basin and the success of propagation projects. However, the proposal lacks adequate detail on how the M&E will be carried out.

Already ESA Req? No

Biop? Yes


Recommendation:
C
Date:
Jul 26, 2002

Comment:

Recommend deferral to Subbasin Planning. Recommend consideration of M&E activities upon completion of a Regional R,M&E Plan.
Recommendation:
Fund
Date:
Oct 30, 2002

Comment:

Project Issue 3: New proposals prioritized by the Columbia Cascade fish and wildlife managers to fit within the province allocation

After working with existing projects, additional funds remained within the province allocation. The prioritization group sought to add projects that advance their most pressing management objectives and also had broad support from the ISRP, CBFWA, Bonneville, and NOAA Fisheries for ESA needs. Three of the four projects proposed have across the board support from the entities that reviewed the proposals:

(a) Project 29040 OK-11 Develop and Propagate Local Okanogan River Summer/Fall Chinook (supported by ISRP, CBFWA, Bonneville; no ESA applicability),

(b) Project 29026 Hanan-Detwiler Passage Improvements (supported by ISRP, CBFWA, Bonneville, NOAA - RPA 149), and

(c) Project 29027 Comprehensive Inventory and Prioritization of Fish Passage and Screening Problems in the Wenatchee and Entiat (supported by ISRP, CBFWA, Bonneville, NOAA - RPA 149, 154).

The fourth project is 29033 Design and Conduct Monitoring and Evaluation Associated with the Reestablishment of Okanogan Basin Natural Production. (supported by ISRP, CBFWA and NOAA-RPAs 182, 184). Bonneville was the long dissenter, rating the project as a "C" and suggesting that this be deferred until after subbasin planning. The sponsor reports that recent discussions with Bonneville may yield a more favorable rating for this project. In any event, the Confederated Colville Tribes states that this project is critical for meeting its overall management objectives for the Okanogan subbasin.

Council Recommendation: The Council recommends funding for these four new projects at the levels identified in the attached projects table. These projects represent the highest priorities of the group working in the Columbia Cascade province. The ISRP supports each project, and two of the projects add ESA applicability as determined by NOAA Fisheries. The Council does not believe that deferring projects pending completion of a regional RM&E plan is appropriate given what appears to be the difficulty and delay the region, and particularly the federal agencies leading the effort, are having in making progress in that area.


Recommendation:
Fund when Funds available. Not critical.
Date:
Apr 30, 2003

Comment:

Phase 3 will be initiated upon resolution of identified issues. This proposal would likely implement RPA 180. BPA has determined in coordination with NOAA Fisheries that this project is not critical for the FY03 - 05 check-ins. Projects may be funded when sufficient funds are available.
Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

Phase 3 project, delayed implementation, shift one year forward. If project started in 2003, 04 projection would be lower.
Recommendation:
Date:
Sep 20, 2003

Comment:


REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$852,482 $763,482 $763,482

Sponsor comments: See comment at Council's website