FY 2002 Columbia Plateau proposal 200203000

Section 1. Administrative

Proposal titleDevelop Progeny Marker for Salmonids to Evaluate Supplementation
Proposal ID200203000
OrganizationConfederated Tribes of the Umatilla Indian Reservation - DNR Fisheries (CTUIR)
Proposal contact person or principal investigator
NameCraig Contor
Mailing addressP.O. Box 638 Pendleton, OR 97801
Phone / email5419662377 / craigcontor@ctuir.com
Manager authorizing this projectGary A. James
Review cycleColumbia Plateau
Province / SubbasinColumbia Plateau / Umatilla
Short descriptionA chemical progeny mark would be developed and tested to evaluate natural reproductive success of supplemented steelhead . The mark would be administered to female parents and would be detectable in the otolith of their progeny.
Target speciesMiddle Columbia ESU Summer Steelhead (Oncorhynchus mykiss)
Project location
LatitudeLongitudeDescription
45.9144 -119.3384 This research will take place in a university laboratory. However, after development of the progeny mark, it will be applied in the Umatilla Basin by the CTUIR steelhead supplementation program. This is the location of mouth of the Umatilla River.
45.894 -119.3254 The Three Mile Dam adult holding/spawning facility is located on the lower Umatilla River at approximately RM 4. After development of the progeny marker, upmigrating female steelhead would be captured and marked at this location.
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS Action 184 NMFS The Action Agencies and NMFS shall work within regional prioritization and congressional appropriation processes to establish and provide the appropriate level of FCRPS funding for a hatchery research, monitoring, and evaluation program consisting of studies to determine whether hatchery reforms reduce the risk of extinction for Columbia River basin salmonids and whether conservation hatcheries contribute to recovery.
NMFS/BPA Action 184 NMFS The Action Agencies and NMFS shall work within regional prioritization and congressional appropriation processes to establish and provide the appropriate level of FCRPS funding for a hatchery research, monitoring, and evaluation program consisting of studies to determine whether hatchery reforms reduce the risk of extinction for Columbia River basin salmonids and whether conservation hatcheries contribute to recovery.

Section 2. Past accomplishments

YearAccomplishment
This is a newly proposed project

Section 3. Relationships to other projects

Project IDTitleDescription
8903500 Umatilla Hatchery O&M The marker will be used as a tool to help evaluate the success of the Umatilla Hatchery program.
198343500 Umatilla Hatchery Satellite Facilities O&M The marker will be used as a tool to help evaluate the success of the Umatilla Hatchery program
9000500 Umatilla Hatchery M&E The marker will be used as a tool to help evaluate the success of the Umatilla Hatchery program
8802200 Umatilla Fish Passage Operations The Umatilla River Fish Passage project has facilities necessary to capture and mark hatchery females with the progeny marker as they migrate up river over Three Mile Dam.
9000501 Umatilla Natural Production M&E The Umatilla Natural Production project will be the primary user of marker when developed and is currently set up to monitor natural production, including sampling outmigrating salmonids.

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Planning and Design phase

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Obj. 1 - Determine chemical composition and delivery medium of marker to be tested on maturing females. (Starts in FY2002) Task 1a - Define the best chemical composition to be used to allow strontium uptake by developing ova. 1 $38,623
Task 1b - Conduct initial trials on a small number of fish to test the physiological effects of the proposed markers on maturing females and developing embyros. 1 $96,558 Yes
Obj. 2 - Test new marker on hatchery-raised, adult, female steelhead to determine whether it can be incorporated into the otoliths of their progeny. (Starts in FY2003) Task 2a - Mark maturing female fish with three different marker concentrations and rear their progeny. 3 $0 Yes
Task 2b - Artificially spawn marked and control females and rear progeny. 3 $0 Yes
Task 2c - Extract otoliths from progeny and prepare samples for elemental analysis. 3 $0
Task 2d - Analyze Sr:Ca ratio within the primordia and freshwater growth regions of each otolith suing electron microprobe. 3 $0 Yes
Obj. 3 - Analyze data gathered from the experimental trials and report results to BPA and the scientific community. (Starts in FY2002) Task 3a - Statistically analyze the data obtained from the electron microprobe sampling to determine whether the marker was effective. 3 $4,828 Yes
Task 3b - Report data to BPA and scientific community. 3 $9,656
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Obj. 2 - Test new marker on hatchery-raised, adult, female steelhead to determine whether it can be incorporated into the otoliths of their progeny. (Starts in FY2003) 2003 2004 $310,145
Obj. 3 - Analyze data gathered from the experimental trials and report results to BPA and the scientific community. (Starts in FY2002) 2003 2004 $40,667
Outyear budgets for Construction and Implementation phase
FY 2003FY 2004
$152,151$198,661

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Monitoring and Evaluation phase

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 0.88 $35,037
Fringe 35% Fringe for FTE's $12,263
Supplies $1,000
Travel $1,068
Indirect $16,785
Capital Computer $2,000
Subcontractor Research contracted to university $81,512
$149,665
Total estimated budget
Total FY 2002 cost$149,665
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$149,665
FY 2002 forecast from 2001$0
% change from forecast0.0%
Reason for change in estimated budget

N/A - newly proposed project

Reason for change in scope

N/A - newly proposed project

Cost sharing
OrganizationItem or service providedAmountCash or in-kind
Other budget explanation

Some aspects of this research will be subcontracted to a college such as the University of Idaho, Oregon State University or Washington State University. Contractor will be selected based on the availablity of facilities for spawning and rearing fish, and expertise in this field of research.


Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Jun 15, 2001

Comment:

Fundable, but a response is needed that summarizes previous studies showing that injected strontium or other materials in an adult appears in smolts. This is a proposal to test a method (artificially induced strontium marks on bony structures) for marking tissue of developing salmon embryos. The proposal is to test the technique as a tool for identifying offspring of adult females injected with strontium. If the technique is found to be useful, it could be used to help understand the fate of offspring from hatchery fish spawning in nature.

There is more relevant literature than the authors cite (not that they needed everything). Exotic markers such as Europium have also been used (very small quantities, but easily detected as anomalies in the scale or otolith focus; no need for Ca and a ratio). There is high likelihood for success.

The proposal needs to better demonstrate that exploratory work by them or someone else indicates that the injection of strontium in the adult will transfer to the eggs during maturation and be detectable in juveniles at smolt size. The whole body immersion in the marine environment does tag the egg and early otolith with strontium, but whether the injections into an upstream migrating adult will work is another matter. A brief summary of the evidence in the literature references appended to the proposal would be helpful before committing to a 3-year research effort. This summary will make the proposal more complete and not dependent on attachments.


Recommendation:
High Priority
Date:
Aug 3, 2001

Comment:

This project addresses NMFS RPA 184. If this work is successful the technique could be a useful management tool for evaluation programs. Cost share will consist of in-kind from the CTUIR. This project was viewed as having merit since the supplementation project has been ongoing for a number of years. Pending the results, this may be especially valuable due to universal applications.
Recommendation:
Fund
Date:
Aug 10, 2001

Comment:

Fundable. The response confirmed that the procedure they proposed (injecting strontium into females for it to show up in progeny) has not been done before even in laboratory tests. If the method proves useful, the ISRP expects the next step will be a proposal to apply the method in an evaluation of supplementation. The important question concerns the impact on fitness of native populations of interbreeding with hatchery fish. This is a difficult problem that will require creative thinking, especially to identify a credible control.
Recommendation:
Date:
Oct 1, 2001

Comment:

Statement of Potential Biological Benefit to ESU
If successful, project would allow determination of hatchery fish spawning rates in the Umatilla subbasin, by marking hatchery fish with a chemical marker. This would provide a method to assess wild population status more robustly (resolving an important uncertainty.) See comments.

Comments
IF this works (see ISRP comments), this has the potential to be a useful tool, if two conditions are met: 1) there should be some benefit to this method over molecular methods -- molecular data can provide more information than this method, and those techniques are already developed. Unless this proposed method is cheaper, easier, etc., it would be better to focus on those molecular techniques. Priority should not be given to this project until some benefit is demonstrated. 2) ALL hatchery fish must be marked, or this method will not produce useful results.

Already ESA Req? no

Biop? yes


Recommendation:
Rank A
Date:
Oct 16, 2001

Comment:

The proposal should include additional out-year costs assuming development of the marker is successful. In the later years, the tribe would want to apply the marker to its propagation program and collect juvenile fish to test for the marker. The proposal only addresses a marker for juvenile progeny of naturally spawning, hatchery-origin fish. A progeny marker should be able to measure the return of that progeny as an adult, after its rearing time in the ocean. This would be a better measure of the success of a hatchery-origin fish spawning in the wild. The proposal should be expanded to seek chemical marks that could be measured throughout the subsequent adult life stage. Strontium, while providing a marker for juvenile progeny, may not work to distinguish fish at the later adult stage after ocean rearing.
Recommendation:
Fund
Date:
Jan 3, 2002

Comment:

Develop a progeny marker to evaluate supplementation, Project 25059 The CTUIR proposes a research project to develop a chemical marker to distinguish hatchery fish from wild populations. The project has received support from NMFS as addressing RPA 184, with two conditions 1) that there is a benefit to this method over a molecular method and 2) that all hatchery fish are marked. Bonneville gave the proposal a Category A funding designation.

Staff Recommendation: Though the Council has tended to disfavor research prior to subbasin planning, staff believes like NMFS and Bonneville that the project could provide a useful tool for distinguishing hatchery fish from wild populations. The project has relatively low costs and would be worthy of Council support.

Budget effect on base program (Project 25059):

FY 2002 FY 2003 FY 2004
Increase $149,665 Increase $152,151 Increase $198,661

Recommendation:
Fund
Date:
Mar 6, 2002

Comment:


Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

Check accruals and billings for 03. Indirect increases and COLA for 04 and 05. Will be an aspect of the study design for M&E plan. Study to complete in 05, delay in project will cause shift for one year.
Recommendation:
Date:
Sep 20, 2003

Comment:

In FY 04 CTUIR is seeking an increase of $4,354 to cover the 2003 unfunded Indirect Rate increase. The previous year budget was submitted with a 34% Indirect Rate because the Department of Interior hadn't officially issued a new approved rate for BPA to consider. Unfunded 2003 Indirect Rate Increase = $4,354.
REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$198,661 $198,661 $198,661

Sponsor comments: See comment at Council's website