FY 2002 Columbia Plateau proposal 198902401

Section 1. Administrative

Proposal titleEvaluate Juvenile Salmonid Outmigration and Survival in the Lower Umatilla River Basin
Proposal ID198902401
OrganizationOregon Department of Fish and Wildlife (ODFW)
Proposal contact person or principal investigator
NameRichard W. Carmichael
Mailing address80866 HWY 395 No. Hermiston, OR 97838
Phone / email5419623777 / rcarmich@eou.edu
Manager authorizing this projectRichard Carmichael
Review cycleColumbia Plateau
Province / SubbasinColumbia Plateau / Umatilla
Short descriptionAssess migration patterns, abundance, survival of hatchery and natural juvenile salmonids in Umatilla basin using PIT tag technology; monitor lamprey and resident fish; assess affects of river variables on fish migration; devel op adult interrogatation
Target speciesspring and fall chinook salmon, coho salmon, summer steehead (MCR ESU), Pacific lamprey, resident species
Project location
LatitudeLongitudeDescription
45.915 -119.33 Location of rotary-screw trap: RM 1.2, Umatilla River, beneath Interstate 82 bridge; T4N/R28E
45.87 -119.32 Location of remote PIT-tag interrogation system at West Extension Canal: RM 3.7, Umatilla River; T4N/R28E
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA
Action 183
Action 184
Action 192

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS Action 185 NMFS The Action Agencies shall continue to fund and expand, as appropriate, fish marking and recapturing programs aimed at defining juvenile migrant survival for both transported and nontransported migrants and adult returns for both groups. These studies shall also compare the SARs of transported and nontransported fish to calculate the differential delayed mortality (D), if any, of transported fish.

Section 2. Past accomplishments

YearAccomplishment
1995 Initially assessed migration patterns for hatchery and natural juvenile salmonids and determined trapping logistics
1995 Initially estimated abundance and survival for hatchery groups; estimated abundance for natural production groups
1995 Documented resident fish species, and avian and piscivorous predators
1995 Documented fish condition and assessment of disease
1995 Determined passage efficiency for juvenile salmonids at West Extension Canal under various operations and flows
1996 Evaluated effects of mid-summer transport (from Westland Canal) on health and survival of juvenile salmonids
1996 Determined species composition and condition and numbers transported from Westland Canal
1996 Documented fish condition, degree of injury inflicted by birds, smolt levels, and assessment of disease
1996 Assessed migration parameters for hatchery and natural juvenile salmonids
1996 Estimated abundance and survival of hatchery migrants
1996 Estimated abundance of natural migrants
1996 Investigated relationships between environmental variables and fish migration
1996 Determined diel movement patterns of juvenile salmonids through the canal facility
1996 Documented avian predators and resident fish species at trap sites
1996 Tested longevity of different mark types on juvenile chinook salmon and steelhead; results not analyzed
1997 Video-monitored fish behavior and passage at Three Mile Falls Dam and identified passage problems and routes
1997 Evaluated effects of mid-summer transport on health and survival of juvenile salmonids
1997 Completed Final Report for Passage Evaluation Study to meet contractural obligations
1997 Identified poor hydraulics for juvenile fish passage at key canal facility locations, using velocity measurements
1997 Determined in-river diel movement patterns of juvenile salmonids
1997 Documented fish condition, degree of injury inflicted by birds, smolt levels, and assessment of disease
1997 Assessed migration parameters for hatchery and natural juvenile salmonids
1997 Estimated abundance and survival of hatchery migrants
1997 Estimated abundance of natural migrants
1997 Documented avian predators, resident fish species, and juvenile lamprey at trap sites
1998 Video-documented juvenile fish passage at Three Mile Falls Dam and estimated proportion using ladder
1998 Evaluated new color marking technique for use in migrant monitoring (photonic marking)
1998 Investigated feasibility of using PIT tags (400 kHz ) on hatchery fish; actively detected fish
1998 Estimated abundance of natural migrants; identified natural production success of fall chinook salmon from adult outplants
1998 Estimated abundance and survival and identified survival problems for specific groups of hatchery fish
1998 Conducted intial reach-specific survival studies with specific groups of PIT-tagged hatchery fish
1998 Investigated flow and temperature effects on fish migration
1998 Assessed migration parameters for hatchery and natural juvenile salmonids
1998 Documented fish condition, degree of injury inflicted by birds, smolt levels, and assessment of disease
1998 Documented avian predators, resident fish species, and juvenile lamprey at trap sites
1999 Installed remote (passive) PIT-tag (400 kHz) interrogation system at West Extension Canal for tagged juvenile migrants
1999 Assessed migration parameters, estimated abundance and survival of PIT-tagged hatchery and natural migrants
1999 Monitored species composition trends through time
1999 Conducted reach-specific survival studies with specific groups of PIT-tagged hatchery fish
1999 Documented fish condition, degree of injury inflicted by birds, and assessment of disease; noted predation problem on STS and subyearling CHF
1999 Documented presence of avian predators, resident fish species, and juvenile lamprey at trap sites
1999 Investigated flow effects on fish migration; determined significant relationship between flow and CHF0 movement
2000 Installed upgraded remote (passive) PIT tag (134 kHz) interrogation system at West Extension Canal: system operational and effective; PIT tags on PTAGIS database
2000 Assessed migration parameters, estimated abundance and survival of PIT-tagged hatchery and natural juvenile salmonids
2000 Documented fish condition, degree of injury inflicted by birds, and assessment of disease: noted predation problem on STS and subyearling CHF
2000 Documented presence of avian predators, resident fish species, and juvenile lamprey at trap sites; conducted trap efficiency tests with lamprey to estimate abundance
2000 Conducted reach-specific survival studies with specific groups of PIT-tagged hatchery fish: increasing trend in survival with lower river releases; poorest survival for STS from Bonifer site;
2000 Investigated flow effects on fish migration: noted expression of different life history behaviors for resident and andromous fish with provision of summer flows
2001 Upgraded remote detection system to automatically upload interrogation files to PTAGIS
2001 Monitored lamprey migrants; noted substantial increase in production

Section 3. Relationships to other projects

Project IDTitleDescription
199000501 Umatilla Natural Production M&E Project receives PIT-tag monitoring data on migration timing & estimates of natural migrant abundance; proposed project PIT tags natural salmonids in lower river to augment sample size, provides assistance during CHS spawn surveys, & collects scales
199000500 Umatilla Hatchery M&E Project receives PIT-tag monitoring data on migration timing and estimates of survival of production fish and strategies; biological information on condition/predation; shares vehicles/ office/equipment/staff with proposed project
199402600 Pacific Lamprey Research & Restoration Project receives juvenile lamprey data on movement and abundance; uses project trap; receives adult lamprey samples; proposed project participates in Lamprey TWG
198903500 Umatilla Hatchery O&M Hatchery program provides use of facilities,equipment, and test fish; receives information on migration success of production releases from various rearing and release strategies to assist in adpative managment;
198373600 Umatilla Passage Facility O&M Project maintains/repairs/modifies sampling facility for monitoring purposes; receives information from proposed project on juvenile fish passage problems at canal site
198902700 Power Re-pay Umatilla Basin Project Project receives biological data on survival and migration success of juvenile migrants as related to flow enhancement strategies; proposed project assesses impact of Phase I operation on bypass efficiency at lower canal site.
198343500 Umatilla Satellite Facilities Project receives data on Coho migration, survival; condition information and migration timing of acclimated fish; provides outmigration information from trap and haul subsampling
198802200 Umatilla River Fish Passage Operations Project receives and uses migrant data to determine timing of transport operations; proposed project monitors production success of outplanted CHF and evaluates survival of transported juvenile fish;
198710001 Enhance Umatilla Basin Fish Habitat Propsed project monitors trends in natural production partly associated with habitat improvements and uses thermograph data
183 RPA Action 183:Habitat Effectiveness Monitoring Proposed project monitors response of salmonid and lamprey populations to instream flow and riparian habitat improvement; monitors water turbidity year-round
184 RPA Action 184: Hatchery Effectiveness Monitoring Proposed project estimates numbers of progeny produced from outplanted hatchery fish (CHF); monitors size, health, quality of smolts and release locations, timing, and life stages of H/W fish; assess H/W fish interactions through migration timing
192 RPA Action 192: Adult Interrogation Proposed project proposes to initiate actions to enable adult/juvenile interrogation at ladder facility in Umatilla Basin
Biological Assessment of Umatilla Basin Project Proposed project monitors listed steelhead movement in relation to instream flows; estimates seasonal abundance

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
2. Design and implement PIT tag interrogation capabilities at Three Mile Falls Dam ladder facility a.Consult with experts and design adult interrogation system for the east-bank ladder at Three Mile Falls Dam 1 $6,410
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Planning and Design phase

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Design and implement PIT tag interrogation capabilities at Three Mile Falls Dam ladder facility b. Install adult interrogation system for east-bank ladder at Three Mile Falls Dam 1 $0
4. Evaluate relative survival between transported and non-transported (in-river) tagged subyearling migrants a. Tag and release subyearling fall chinook upriver for treatment (transported) and control (in-river) tests 1 $8,716
4. b. Actively and passively interrogate control fish at RM 3.7 1 $5,342
4. c. Obtain tag detections of treatment and control fish at mainstem dams to determine differences in minimum survival. 1 $267
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Design and implement PIT tag interrogation capabilities at Three Mile Falls Dam ladder facility- install interrogation system 2003 2003 $29,289
4. Evaluate relative survival between transported and non-transported tagged fish 0 $0
Outyear budgets for Construction and Implementation phase
FY 2003
$29,289

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Conduct PIT tag interrogation operations at West Extension Canal a. Operate a remote PIT-tag interrogation system at the sampling facility at West Extension Canal to interrogate tagged fish. 3 $21,366
1. b. Edit, validate, send, and retrieve PIT-tag files; create tag report summaries 3 $13,354
1. c. Extract PIT-tag summary reports from PTAGIS for analysis 3 $2,671
2. Design and implement PIT-tag interrogation capabilities at Three Mile Falls Dam ladder facility c.Operate the east-bank interrogation system by spring 2003 and manage tag files ongoing $0
3. Determine juvenile migrant abundance, migration timing, and in-basin survival of tagged fish representing various hatchery rearing, release, and acclimation strategies. a. Assist with tagging production and test groups at Umatilla Hatchery 3 $8,012
3. b.Conduct trap efficiency tests for tagged production groups at RM 3.7 3 $36,270
3. c.Tag hatchery coho salmon at acclimation ponds 1 $5,371
3. d.Actively and passively interrogate tagged hatchery salmonids to estimate abundance ,in-basin survival, migration 3 $18,695
5. Determine migration timing and abundance of tagged natural fish, and monitor trends in natural production of salmon, steelhead, and Pacific lamprey. a.Actively monitor natural salmonid and Pacific lamprey migrants at RM 1.2, using the rotary-screw trap, and at the sampling facility at West Extension Canal. 3 $26,708
5. b. Conduct trap efficiency tests for tagged groups of natural salmonids at RM 3.7. 3 $15,716
5. c. Expand tagging of natural summer steelhead and chinook salmon to supplement upriver tagging by CTUIR for estimation of smolt-to-adult survival. 3 $6,692
5. d. Assist with fall/winter fyke-net trapping of juvenile lamprey by CTUIR in the lower river (RM 0.5). 3 $5,342
5. e. Actively and passively interrogated tagged natural salmonids and estimate abundance and determine migration. 3 $13,354
6. Assess condition, health, size, and growth of hatchery and natural migrants. a. Examine subsample of hatchery and natural fish for condition 3 $8,012
6. b. Preserve mortalities of natural fish and of diseased hatchery fish for examination by pathology staff. 3 $5,342
6. c. Measure lengths of tagged and untagged hatchery fish and natural fish. 3 $8,012
6. d. Sample scales from natural migrants for determination of age, growth, and life history characteristics by CTUIR. 3 $5,342
7. Investigate effects of river, canal, and fishway operations, and environmental conditions on fish migration and survival. a. Measure river turbidity; obtain thermograph and flow data from cooperating agencies. 3 $6,677
7. b. Analyze fish migration parameters with river variables. 3 $2,671
7. c. Determine affect of canal and fishway operations and flow enhancement strategies on anadromous and resident fish behavior at Three Mile Falls Dam. 3 $2,671
8. Document temporal distribution and diversity of resident fish species at trap sites. a. Identify and count resident fish species 3 $4,006
8. b. Measure representative samples of resident fish lengths. 3 $4,006
9. Participate in planning and coordination activities in the basin and disseminate results. a. Participate in basin coordination and planning meetings 3 $6,677
9. b. Present findings within professional forums and journals. 3 $6,677
9. c. Prepare an annual progress report within 1 year of contract period. 3 $32,048
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Conduct PIT tag interrogation operations at West Extension Canal 2003 2004 $83,097
2. Design / implement PIT-tag interrogation capabilities at Three Mile Falls Dam 2003 $27,502
3. Determine juvenile migrant abundance, migration timing, and in-basin survival of tagged fish representing various hatchery rearing, release, and acclimation strategies. 2003 2004 $133,650
5. Determine migration timing and abundance of tagged natural fish, and monitor trends in natural production of salmon, steelhead, and Pacific lamprey. 2003 2004 $141,043
6. Assess condition, health, size, and growth of hatchery and natural migrants. 2003 2004 $54,335
7. Investigate effects of river, canal, and fishway operations, and environmental conditions on fish migration and survival. 2003 2004 $25,196
8. Document temporal distribution and diversity of resident fish species at trap sites. 2003 2004 $16,034
9. Participate in planning and coordination activities in the basin and disseminate results. 2003 2005 $266,004
Outyear budgets for Monitoring and Evaluation phase
FY 2003FY 2004FY 2005
$276,531$306,308$164,022

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 3.5 $144,762
Fringe $57,797
Supplies $4,050
Travel $6,470
Indirect $44,698
Capital $0
NEPA $0
PIT tags # of tags: 8,600 $19,350
Subcontractor $0
Other Operation and Maintenance $9,300
$286,427
Total estimated budget
Total FY 2002 cost$286,427
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$286,427
FY 2002 forecast from 2001$306,414
% change from forecast-6.5%
Reason for change in estimated budget

Reduction in number and cost of PIT tags; reduction in Indirect cost rate; reduction in share of office rent;

Cost sharing
OrganizationItem or service providedAmountCash or in-kind
Other budget explanation

Project is expected to sunset in 2005; emphasis will be on development of reports and journal articles


Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable - no response required
Date:
Jun 15, 2001

Comment:

Fundable. This is a well-designed monitoring and evaluation program that provides a basis for evaluation of habitat improvement measures and other projects. In addition, it collects information necessary for the hatchery evaluation and monitoring project. It would be useful to include a discussion of what the data show about the success of the watershed restoration program for fish. This is valuable work with publishable results accumulating on natural production, including evidence of a potential smolt capacity (~50,000), hatchery survivals during smolt migration, and other potential research uses for these results if future experiments or investigations are well described. Express the smolt yield as a function of the number of spawners, i.e., as smolts per spawner, relative to the number. Is natural smolt recruitment above replacement at current survival rates in freshwater and the ocean? Several internal publications - need to publish in formal fisheries literature. The goal of assessment of affects of river variables on fish migration should commence with a thorough literature review on salmonid smolt migration. This project could benefit by inclusion of a broader range of researchers interested in migration and survival - literature review and publication will assist in stimulating that scientific interest, to the benefit of the project.


Recommendation:
High Priority
Date:
Aug 3, 2001

Comment:


Recommendation:
Fund
Date:
Aug 10, 2001

Comment:

Fundable. This is a well-designed monitoring and evaluation program that provides a basis for evaluation of habitat improvement measures and other projects. In addition, it collects information necessary for the hatchery evaluation and monitoring project. It would be useful to include a discussion of what the data show about the success of the watershed restoration program for fish. This is valuable work with publishable results accumulating on natural production, including evidence of a potential smolt capacity (~50,000), hatchery survivals during smolt migration, and other potential research uses for these results if future experiments or investigations are well described. Express the smolt yield as a function of the number of spawners, i.e., as smolts per spawner, relative to the number. Is natural smolt recruitment above replacement at current survival rates in freshwater and the ocean? Several internal publications - need to publish in formal fisheries literature. The goal of assessment of affects of river variables on fish migration should commence with a thorough literature review on salmonid smolt migration. This project could benefit by inclusion of a broader range of researchers interested in migration and survival. Literature review and publication will assist in stimulating that scientific interest, to the benefit of the project.
Recommendation:
Date:
Oct 1, 2001

Comment:

Statement of Potential Biological Benefit to ESU
Provide greater understanding of canal, transportation, hatchery and river operations on salmonid populations in the Umatilla River by conducting individual-based (PIT-tag) studies of outmigrating juveniles

Comments
This is ongoing work. PIT-tag studies are important. Much of the hatchery work is required under the hatchery BiOp. Habitat evaluation should be better coordinated with other habitat efforts (e.g. ODFW monitoring/subbasin assessment).

Already ESA Req? no

Biop? yes


Recommendation:
Rank A
Date:
Oct 16, 2001

Comment:

Research in the basin needs to be refocused. There have been extensive efforts to evaluate the hatchery experiment. Unless there are critical uncertainties in hatchery operations (oxygen supplementation is one), the focus should shift more to determining what parts of the plan are not working. Efforts should shift toward "monitoring" of hatchery contribution. The straying of fall chinook is the main problem that has created out-of-basin ESA issues. The research should focus on this.
Recommendation:
Fund
Date:
Jan 3, 2002

Comment:


Recommendation:
Fund
Date:
Mar 6, 2002

Comment:


Recommendation:
Fund
Date:
Sep 20, 2003

Comment:


Recommendation:
Date:
Sep 20, 2003

Comment:

Minor cost increase due to COLA
REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$306,235 $306,235 $306,235

Sponsor comments: See comment at Council's website