FY 2002 Columbia Plateau proposal 199000501

Section 1. Administrative

Proposal titleUmatilla Basin Natural Production Monitoring and Evaluation Project
Proposal ID199000501
OrganizationConfederated Tribes of the Umatilla Indian Reservation (CTUIR)
Proposal contact person or principal investigator
NameCraig Contor
Mailing addressP.O. Box 638 Pendleton, Oregon 97801
Phone / email5419662377 / craigcontor@ctuir.com
Manager authorizing this projectGary James
Review cycleColumbia Plateau
Province / SubbasinColumbia Plateau / Umatilla
Short descriptionMonitor and evaluate natural spawning, rearing, migration, survival, age and growth characteristics and life histories of adult salmon, steelhead, bull trout and mountain whitefish, and their naturally produced progeny in the Umatilla River Basin.
Target speciesSpring Chinook Salmon, Fall Chinook Salmon, Coho Salmon, Summer Steelhead (mid Columbia ESU), Resident Redband Trout, Bull Trout (ESA listed species) and Mountain Whitefish
Project location
LatitudeLongitudeDescription
Project ranges from the mouth of the Umatilla River to the Headwaters
Headwaters of the Umatilla River Basin to the East
Headwaters of the Umatilla River Basin to the South
Headwaters of the Umatilla River Basin to the West
45.68 -118.51 Umatilla River
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription

Section 2. Past accomplishments

YearAccomplishment
1991-2006 Spawning Surveys: Annual spawning surveys document the location and timing of spawning for each species and stock, including prespawning mortality, total number of redds, the ratio of redds/adult available to spawn and total egg deposition.
1993-1998 Habitat surveys: Habitat surveys were coordinated and conducted by CTUIR, USFS and ODFW. CTUIR completed intensive habitat assessments on 138.5 miles of stream in the basin. This data was a basis for estimating salmonid rearing potential basin-wide
1992-1996 Adult Passage Evaluations: This four year project monitored adult salmon and steelhead passage (using radio telemetry) over irrigation diversions in the Umatilla River at various flows. Problems were documented at Feed Canal Dam.
1992 Collected samples for steelhead genetics studies conducted by Currens and Schreck (1993, 1995).
1993-2006 Juvenile outmigration studies: Trap data provides considerable life history data and estimates of smolt migration timing and minimum survival. SARs for wild stocks may also be derived through adult PIT tag detection systems if deployed in mainstem dams.
1993-2006 Salmonid Surveys: Examine salmonid populations to determine rearing success and system potential. Estimated a potential tripling of rearing habitat with moderate improvements in stream habitat quality (primarily water temperature and sediment).
1993-2000 Residualization: Examine residualization of hatchery reared salmon and steelhead annually during trapping and salmonid surveys and determined that few hatchery fish residualize in the headwater rearing areas.
1993-2006 Fish Growth and Life Histories: Monitor growth and life history characteristics of endemic steelhead (& reintroduced salmon) during years with higher and lower rearing densities of juvenile salmon produced naturally by returning adult hatchery salmon.
1993-2006 Harvest Monitoring: CTUIR monitors the tribal harvest of summer steelhead and salmon. Tribal fisherman harvested from about 40 steelhead annually and have harvested spring chinook salmon during 9 of 12 seasons with harvests ranging from 100 to 700 year.
1993-2006 Water Temperature Monitoring: Monitor water temperatures throughout the basin in coordination with ODFW, USFS and BOR for habitat and flow management and to estimate the suitability of stream reaches for salmonids and to monitor habitat recovery.
1993-2006 Processes: Complied with the required administrative processes of BPA, GSA, ESA, USFWS, USFS, NMFS, CRITFC, CBFWA, ISRP, NWPPC, ODFW, WDFW, DEQ, TMDL, watershed assessments, master plans, multiple (redundant) sub-basin plans, UMMEOC and AOP.
1993-2006 Bull Trout: Bull trout observations by CTUIR biologists are recorded and shared with ODFW and the bull trout recovery team. In fact much of the Umatilla Basin bull trout data in Buchanan et al. 1997, was collected this project.

Section 3. Relationships to other projects

Project IDTitleDescription
Develop Progeny Marker for Salmonids to Evaluate Supplementation After the Progeny Marker Project develops and tests the mark, our M&E project will use it to evaluate the reproductive success of hatchery reared endemic steelhead allowed to spawn naturally in the Umatilla Basin (beginning in 2005).
9000500 Umatilla Hatchery M&E Our M&E project coordinates monitoring throughout the basin with the Hatchery M&E program. Our M&E project collects coded wire tags form hatchery reared adults found during spawning surveys. Tag recoveries are critical to the Hatchery M&E programs.
8902401 Evaluation of Juvenile Salmonid Outmigration and Survival Our M&E project relies on the Outmigration project to maintain the PIT tag detector at Three Mile Dam, to detect the natural smolts we tag, to estimate detector efficiency rates, and to augment our tagging of naturally produced smolts.
8805302 Design and Consturct Umatilla Hatchery, Supplement The hatchery supplement will increase hatchery adults spawning in the wild with increases in returning adults. Our M&E project monitors these spawners and their progeny as well as residualism rates of hatchery smolts.
8373600 Umatilla Passage Facility Operations and Maintenance Our project measures the success of this project indirectly in terms of increased natural production.
8902700 Power Repay Operations and Maintenance of USBR CRP Project
8343500 Umatilla Hatchery Satellite Operation and Maintenance The acclimation facilities release hatchery reared smolts to increase natural production through returning adult spawners. Our M&E project monitors these spawners and their progeny as well as residualism rates of hatchery smolts.
8802200 Umatilla Fish Passage Operations Passage Operations provides quality adult return data for our M&E project to estimate adult return rates. Passage Operations also coordinates water storage releases that benefit hatchery and natural smolt and adult migrations.
9506000 Lamprey Restoration We provide the Lamprey Project with any information we collected on juvenile and adult lamprey while completed project tasks.
9008000 PIT Tag Information System We depend on the PIT tag system to coordinate and store PIT tag data and interrogate and detect our PIT tagged smolts throughout the Columbia Basin.
8710001 Umatilla Fish Habitat Enhancement Our M&E project monitors salmonids and habitat features within and adjacent to habitat enhancement projects.

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Planning and Design phase

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Construction and Implementation phase

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Monitor spawning activities of hatchery and natural spring and fall chinook and coho salmon, and summer steelhead in the Umatilla River Basin. a. Document the number and location of redds and examine carcasses. ongoing $53,000
b. Estimate survival to spawning and total egg deposition by species and reach. ongoing $3,800
c. Collect and record length, sex, pre/post spawn mortality data, coded wire tags, marks, fin clips, kidney samples and scales from the appropriately marked carcasses examined on the spawning grounds. ongoing $3,800
d. Summarize, analyze, report findings and examine management implications ongoing $3,247
2. Estimate timing and survival of juvenile salmon and steelhead migrating from the Umatilla River to the Lower Columbia (John Day and Bonneville Dam PIT tag interrogation sites). a. PIT tag natural juvenile chinook and summer steelhead in the Umatilla River Basin with traps, electrofishing and other methods. ongoing $44,089
b. Submit and extract tagging and detection files. ongoing $3,800
c. Estimate timing and minimum in-river survival from PIT tag detections at down-river sites. ongoing $3,800
d. Estimate smolt to adult survival and back calculate natural smolt production based on smolt tagging rates and ratios of tagged to untagged naturally produced returning adults. Summarize and analyze data, examine management implications and report. ongoing $9,550
3. Estimate juvenile salmonid abundance, distribution and rearing densities at index sites and selected stream reaches in the Umatilla River Basin. a. Electrofish established index sites and selected stream reaches. Isolate sites with block-nets and use depletion methods to estimate salmonid densities and report. ongoing $45,700
4. Estimate tribal harvest of adult salmon and steelhead returning to the Umatilla River Basin. a. Design and implement a roving creel survey and telephone survey depending on season and location of fisheries as determined by tribal authorities and report. ongoing $45,700
5. Monitor stream temperatures in the Umatilla River Basin in cooperation with other monitoring agencies. a. Deploy thermographs in April. Check status and function of thermographs regularly during deployment ongoing $7,600
b. Retrieve and download thermographs in November, summarize and report. ongoing $7,600
6. Determine age, growth and life history characteristics of salmon, steelhead and bull trout (secondarily) in the Umatilla River Basin. a. Take scales from juvenile and adult salmon and steelhead during trapping, electrofishing and spawning surveys. ongoing $7,600
b. Mount and press adult scale samples. Place juvenile scales directly between labeled acetate sheets at the time of sampling. ongoing $3,800
c. Determine the proportion of unmarked adult salmon that are of hatchery and natural origin based on circuli counts from the scale focus to the first annuli. ongoing $3,800
d. Read scales and determine age, growth, life history characteristics and the years of freshwater and saltwater rearing of adult natural steelhead and salmon. Summarize data, examine management implications and report findings. ongoing $8,000
7. Comply to the required administrative processes of BPA, GSA, ESA, USFWS, USFS, NMFS, CRITFC, CBFWA, ISRP, NWPPC, ODFW, WDFW, DEQ, TMDL, watershed assessments, master plans, sub-basin plan reviews, UMMEOC and AOP . a. Complete the necessary permit applications and proposals. Summarize data, analyze data, examine management implications and write reports. Attend the necessary coordination, planning and consultation meetings. ongoing $45,830
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Monitor spawning activities of hatchery and natural spring and fall chinook and coho salmon, and summer steelhead in the Umatilla River Basin. 2003 2006 $258,000
2. Estimate timing and survival of juvenile salmon and steelhead migrating from the Umatilla River to the Lower Columbia (John Day and Bonneville Dam PIT tag interrogation sites). 2003 2006 $238,000
3. Estimate juvenile salmonid abundance, distribution and rearing densities at index sites and selected stream reaches in the Umatilla River Basin. 2003 2006 $194,000
4. Estimate tribal harvest of adult salmon and steelhead returning to the Umatilla River Basin. 2003 2006 $194,000
5. Monitor stream temperatures in the Umatilla River Basin in cooperation with other monitoring agencies. 2003 2006 $64,000
6. Determine age, growth and life history characteristics of salmon, steelhead and bull trout (secondarily) in the Umatilla River Basin. 2003 2006 $100,000
7. Comply to the required administrative processes of BPA, GSA, ESA, USFWS, USFS, NMFS, CRITFC, CBFWA, ISRP, NWPPC, ODFW, WDFW, DEQ, TMDL, watershed assessments, master plans, sub-basin plan reviews, UMMEOC and AOP . 2003 2006 $202,000
8. Begin injecting hatchery adult steelhead at Three Mile Dam with progeny marker medium to evaluate their contribution to the natural production of smolts and adults (see new project "Develop Progeny Marker for Salmonids". 2005 2006 $20,000
9. Examine endemic steelhead genetics (two year objective) 2005 2006 $130,000
Outyear budgets for Monitoring and Evaluation phase
FY 2003FY 2004FY 2005FY 2006
$300,000$310,000$390,000$400,000

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 3.29 $141,459
Fringe 35% $49,509
Supplies $8,320
Travel Per-diem and GSA vehicles lease and mileage. $13,910
Indirect 34% $74,018
PIT tags # of tags: 6000 $13,500
$300,716
Total estimated budget
Total FY 2002 cost$300,716
Amount anticipated from previously committed BPA funds$20,000
Total FY 2002 budget request$280,716
FY 2002 forecast from 2001$188,000
% change from forecast49.3%
Reason for change in estimated budget

Estimated costs for this project changed primarily for four reasons. First, various obligatory and redundant planning, permitting and clearance processes have increased exponentially. Second, funds from the Bureau of Indian Affairs for harvest monitoring (a cost share) are no longer available (0.75 FTE). Third, Managers request an extension of the PIT tagging objective to gain more insight to the outmigration timing, survival and smolt to adult survival rates of naturally produced smolts. Finally, considerable effort and resources are needed in the evaluation of McKay Creek habitat and salmonid populations associated with the restoration of perennial flows in the lower six miles beginning in the fall of 2000. McKay Creek flow management is also important in the maintenance of suitable water temperatures in the Umatilla River below the mouth of McKay Creek during the summer. Approximately 15 miles of river habitat has been enhanced and is now suitable for the rearing of salmonids all year and warrants evaluation.

Reason for change in scope

No change in scope is proposed until 2005 when the genetic characteristics of the endemic steelhead should be re-examined and compared to the findings of Currens and Schreck (1993, 1995). In additions, the progeny mark (developed by a new project proposed this year) should be ready by 2005 to begin examining the reproductive success (in terms of smolts and adult returns) of hatchery reared endemic steelhead spawning in the wild in the Umatilla Basin.

Cost sharing
OrganizationItem or service providedAmountCash or in-kind
CTUIR Bio-Aids $14,400 cash

Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Jun 15, 2001

Comment:

Fundable if adequate responses are given to ISRP concerns. More explanation is required of the methods and results (which need to be presented). The proposal indicates a well coordinated, adaptive, multi-agency approach to monitoring and evaluation of the key response variables required for stock assessment and restoration effectiveness, including regular routine genetics surveys which could complement other research planned or underway to examine wild and hatchery interactions, and good communications through regular reporting, meetings, and workshops, and a web site. Nonetheless, some improvements are suggested. The goals of providing harvest and supplementation for population rebuilding are in conflict - a modeling workshop/review is suggested. The literature review provided here was thorough, publishable, and useful. The rates of residualism that were reported are low in comparison to upriver releases elsewhere, where about half of the male smolts failed to migrate then died over summer after displacing wild steelhead parr from stream habitat. The finding that quality habitat is sufficiently utilized should act as a red light to supplementation plans. It also suggests that managing our way out of the current low ocean survival bottleneck (some reprieve may be currently evident) lies in increasing the productivity and capacity of the freshwater habitat. Further work is suggested to calibrate redd counts with wild and hatchery steelhead abundance. Other measures of adult abundance should be explored (e.g., area under the curve, resistivity counters, adult fences). Wild and hatchery adult abundance likely fluctuate in parallel primarily as a function of ocean conditions. Frequent reference was made to the mortality in the downstream migration, within the Columbia. Information should be presented, including variability. A comparison of the Umatilla, Walla Walla, and John Day data from monitoring and evaluation would prove highly instructive, since they represent, respectively, a system that has been augmented for some time, one where hatchery introductions are planned, and one that has had no hatchery introduction but much habitat improvement work. The proposal should have presented some of the copious amounts of data gathered, including some comparative results from the other watersheds in the Columbia Plateau. A provincial scale analysis of the monitoring and evaluation is required.

There is need for very close coordination and cooperation among the tribal and ODFW projects on the Umatilla River, particularly among three of them, including this one and Project 8902401, Evaluation of Juvenile Salmonid Outmigration and Survival in the Lower Umatilla River, and Project 9000500, Umatilla Hatchery Monitoring and Evaluation.


Recommendation:
High Priority
Date:
Aug 3, 2001

Comment:


Recommendation:
Fund
Date:
Aug 10, 2001

Comment:

Fundable in part. The ISRP clearly requested results on trends in abundance from data collections and offered several suggestions on experimental design and fish enumeration, but instead received details of methods with occasional mention of findings. The response was inadequate. This is a monitoring project, yet inadequate information was presented to show that benefits are accruing from past and present program activities, to permit assessment of the present strategy, and to justify continued funding.

Work to meet Objectives 2 and 7 is fundable. Work under Objectives 1, 3, 5, and 6 must show that it is not handicapped by the problem experienced with the Oregon coastal coho salmon monitoring as implemented from the 1950's to the 1990s, which was inadequate and gave inaccurate results. Oregon's protocols were changed to include random selection of sampling sites. If funded, protocols under this project must be consistent with those in the Oregon Plan as being implemented in projects 199801600 and 25088.

Work under Objective 4 needs to use more rigorous and reliable methods than telephone surveys to estimate harvest.


Recommendation:
Date:
Oct 1, 2001

Comment:

Statement of Potential Biological Benefit to ESU
supports adaptive management approach to improving production in the Umatilla River by tracking natural spawning of salmon and steelhead of hatchery and/or natural origin

Comments
Monitoring and evaluation of several on-going programs important to sub-basin objectives. MULTIPLE refers to MCR SH, MCR SCH, coho-u, fall chn-u, others

Already ESA Req? NO

Biop? NO


Recommendation:
Date:
Oct 1, 2001

Comment:

Statement of Potential Biological Benefit to ESU
Fall chinook and spring chinook marking component of this project allows for identification and removal of adults that stray into Snake River.

Comments
Spring chinook and fall chinook marking component required by hatchery BiOp.

Already ESA Req? YES

Biop? NO


Recommendation:
Rank A
Date:
Oct 16, 2001

Comment:

All of the activities in the Umatilla subbasin should be evaluated for efficiency issues. A number of different projects have similar objectives and tasks that might be equally successful with lower administration, supervision, and overhead costs. For example, this project and project no. 198902401 (ODFW) are both addressing juvenile fish survival using PIT tag technology. BPA would likely obtain this information at less cost if this work were consolidated. Additioanlly, at least three BPA-funded projects are collecting temperature data in the Umatilla subbasin; it might be collected more cost-effectively by a single entity. BPA will consider not funding the harvest monitoring activities of the Trie at this time since BIA funds are no longer available. Monitoring of Tribal steelhead harvest has questionable value when annual estimates are only 25-39 fish. Again, we strongly suggest an efficiency analysis be conducted among ODFW, CTUIR, etc. to determine how to meet the objectives in this subbasin at least cost.
Recommendation:
Fund
Date:
Jan 3, 2002

Comment:

"Fundable In Part" for Umatilla Basin Natural Production Monitoring and Evaluation - Project 199000501

Evaluate natural spawning, rearing, migration, survival, age and growth characteristics and life histories of adult salmon, steelhead, bull trout and mountain whitefish, and their naturally produced progeny in the Umatilla River Basin

Staff recommendation: Though the ISRP was critical of the project and the inadequacies of the response, they also acknowledged the benefits of the project to date. The principle concern by the ISRP was that objectives 1,3,5 and 6 are adequate enough to ensure that results are accurate. Council staff concurs with this recommendations and request Bonneville to ensure the ISRP recommendations are addressed and implemented in contracting

Budget effect on base program (Project 199000501):

FY 2002 FY 2003 FY 2004
Increase $95,000 Increase $95,000 Increase $95,000

Recommendation:
Fund
Date:
Mar 6, 2002

Comment:

BPA will work with the project sponsor through contract negotiations to ensure that there is no redundancy in the project's scope and that the sampling designs and methods are well-developed and appropriate to satisfy regional and local needs.
Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

Likely underspent for loss of key position. Will under accrue, maybe by 50K without CWT reader (see below). Outyears are tied to M&E plan for 04. 20K CWT reader could be purchased through contract modification for 03. Indirect increase.
Recommendation:
Date:
Sep 20, 2003

Comment:

For FY 04 CTUIR is seeking an increase of $28,273 to cover previous years of unfunded increases in Indirect rates. Previous year budgets were submitted with a 34% Indirect Rate because the Department of Interior hadn't officially issued a new approved rate for BPA to consider. Unfunded 2002 Indirect Increase @ 37.2% = $12,899. Unfunded 2003 Indirect Rate @ 39.64% = $15,374.
REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$395,129 $395,129 $395,129

Sponsor comments: See comment at Council's website