FY 2002 Mountain Columbia proposal 200200200

Section 1. Administrative

Proposal titleAssess Feasibility of Enhancing White Sturgeon Spawning Substrate Habitat, Kootenai R., Idaho
Proposal ID200200200
OrganizationKootenai Tribe of Idaho (KTOI)
Proposal contact person or principal investigator
NameGary Barton
Mailing address1201 Pacific Ave., Suite 600 Tacoma, WA 98402
Phone / email2534283600 / gbarton@usgs.gov
Manager authorizing this projectSue Ireland
Review cycleMountain Columbia
Province / SubbasinMountain Columbia /
Short descriptionConstruct sediment transport models to assess the feasibility to enhance white sturgeon spawning substrate habitat, Kootenai R., ID. Study temporal/transient changes in sediment type, bedform, and eroision/depostion on spawning substrate.
Target speciesKootenai River white stugeon(ESA) population and other native fish
Project location
LatitudeLongitudeDescription
48.93 -116.46 Kootenai River
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription

Section 2. Past accomplishments

YearAccomplishment
1997 USGS measured the spatial distribution of river velocities using an acoustic doppler current profiler during white sturgeon spawning near Bonners Ferry.
1999 USGS collected seismic profiles of the Kootenai River substrate during white sturgeon spawning near Bonners Ferry.
2000 USGS collected subbottom profiles and cored river botom sediments at 34 sites in the white sturgeon spawning reach. USGS is using these data and historical data to characterize the substrate of the Kootenai River white sturgeon spawning habitat.

Section 3. Relationships to other projects

Project IDTitleDescription
8806400 KTOI is implementing the conservation aquaculture program to prevent extinction, and begin rebuilding age class structure of kootenai R. white sturgeon. Objectives include identifying best management options to enhance aquatic ecosystem. USGS made available to this project stream flow and baseline geomorphological substrate data that is necessary to develop, evaluate, test, and analyze solutions to ecosystem problems.
9404900 KTOI is also performing assessments, data analysis, and research in order to identify best management strategies to enhance aquatic biota in the Kootenai River ecosystem to recover native species assemblages across multiple trophic levels USGS made available to theis project stream flow and baseline geomorphological substrate data that is necessary to develop, evaluate, test, and analyze solutions to ecosystem problems.
8806500 Kootenai River Fisheries Recovery Investigations project USGS measured the spatial distribution of river velocities using an acoustic doppler current profiler and collected seismic profiles of the substrate during white sturgeon spawning near Bonners Ferry.
8346700 Libby Reservoir Levels and Impact on Resident Fish project. Objectives includes calibrating simulations of hydraulic conditions and surveying the river habitat USGS data collected during FY1997 and FY1998 and the data collection proposed herein support these project objectives

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1.Project planning and develop public web site for positing progress reports, data, and project products 0.3 $5,000 Yes
2. Monitor and create animation of sediment transport and bedform movement in sturgeon spawning habitat 2.1. Review the hydraulic and fluvial sediment data to improve design of monitoring efforts 0.3 $3,000
2.2 Measure stream flow, suspended sediment load and bed load at the USGS Bonners Ferry gage 1.7 $45,000
2.3 Reactivate USGS Copeland gage. Measure periodic stream flow, suspended sediment load and bedload 1.7 $17,000
2.4 Conduct bathymetry survey and generate a high-resolution GIS bathymetry map of the white sturgeon substrate habitat 0.5 $30,000
2.5 Monitor the size and movement of bedforms at select spawning sites 1.7 $20,000
2.6 Create animation of actual bedform movement on sturgeon spawning substrate habitat. 1.7 $8,000
2.7 Conduct sieve analysis on a subset of archived Kootenai River substrate sediment samples. 1.0 $3,000
2.8 Sample Kootenai River substrate between Deep Creek and the interstate bridge at Bonners Ferry. Sample over a range of flow conditions to monitor the transition zone between sand and gravel substrate. Conduct sieve analysis on substrate samples 1.0 $4,000
3. Describe availability and movement of fluvial sediment through white sturgeon spawning habitat and identify where habitat substrate is currently aggrading, degrading, and stable 3.1 Quantify the composition and quantity of fluvial sediment being deposited, resuspended, and transported through the white sturgeon spawning habitat 1.5 $20,000
3.2 Develop relations, graphical or otherwise, that grossly characterize fluvial sediment transport and bedform development for a range of flow condition on the Kootenai R. 1.5 $4,000
3.3 Identify areas where spawning habitat substrate is currently aggrading, degrading, or is stable 2 $15,000
4. Develop sediment-transport models, develop spawning habitat substrate improvement scenarios, and assess the feasibility of habitat enhancement 4.1 Construct a 1-dimensional sediment- transport model (USGS code) and calibrate to historic and recently collected fluvial-sediment and bathymetry data 1.5 $51,700
4.2 Use the 1-dimensional sediment-transport model to predict future substrate elevations, bedforms, and substrate sediment composition .5 $15,000
4.3. Develop spawning habitat substrate improvement scenarios .5 $5,000
4.4 Construct and calibrate a quasi 3-dimensional sediment-transport model (USGS) for one or more spawning subreach 1.5 $49,300
4.5 Conduct predictive quasi 3-dimensional sediment-transport simulations to assess the efficacy of spawning habitat substrate enhancement .5 $15,000
5. Prepare peer review reports and post on public web page 1.5 $40,000
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Planning and develop public web site for positing progress reports, data, and project products 2001 2001 $5,000
2. Monitor and create animation of sediment transport and bedform movement in sturgeon spawning habitat 2001 2002 $120,000
3. Describe availability and movement of fluvial sediment through white sturgeon spawning habitat and identify where habitat substrate is currently aggrading, degrading, and stable 2001 2002 $34,000
4. Develop sediment-transport models, develop spawning habitat substrate improvement scenarios, and assess the feasibility of habitat enhancement 2002 2003 $126,000
5. Prepare peer review reports and post on public web page 2002 2003 $40,000
Outyear budgets for Planning and Design phase

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Implement Phase II - Design, construction, implementation, monitoring and evaluation of in-stream structures which would potentially enhance habitat for white sturgeon spawning. 2003 2006 $1,500,000
Outyear budgets for Construction and Implementation phase
FY 2003FY 2004FY 2005FY 2006
$100,000$1,000,000$200,000$200,000

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Implement Phase II - Design, construction, implementation, monitoring and evaluation of in-stream structures which would potentially enhance habitat for white sturgeon spawning. 2004 2006 $180,000
Outyear budgets for Monitoring and Evaluation phase
FY 2004FY 2005FY 2006
$60,000$60,000$60,000

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 6 $94,000
Fringe $20,500
Supplies $23,000
Travel $10,000
Indirect $137,000
Subcontractor $65,500
$350,000
Total estimated budget
Total FY 2002 cost$350,000
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$350,000
FY 2002 forecast from 2001$0
% change from forecast0.0%
Cost sharing
OrganizationItem or service providedAmountCash or in-kind
USGS $185,000 cash

Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Feb 9, 2001

Comment:

A response is needed to justify the large effort focused on sediment dynamics when it is not clear biologically that this is the critical element. This is a resubmitted, new proposal by the U.S. Geological Survey to characterize sediment in the mainstem Kootenai River white sturgeon spawning areas, downstream of Libby Dam in the vicinity of Bonners Ferry, Idaho. The proposition is that sediment delivery and movement in the channel system has been significantly modified by Libby Dam, the specifics of the effects on sturgeon bottom habitat are hypothesized but not well documented and quantified, and that research is needed to plan for habitat remediation (in a Phase II to be done separately). This is a component of the overall sturgeon work in the lower Kootenai River, especially Project 198806400.

This year's proposal addresses the main concern of last year's ISRP review, that the FY 2001 proposal was not well linked to an overall umbrella for the Kootenai River work. Although the work proposed this time appears to be essentially the same as the previous proposal, with some refinements, this proposal explicitly links the work to items called for in the USFWS Biological Opinion and Recovery Plan for white sturgeon and the Subbasin Summary. The objectives are matched directly to statements and requirement given in these documents. The regional context is thus much clearer and the apparent need well established.

However, the technical and scientific background to justify such a strong focus on sediment dynamics is weak. Despite well-recognized problems with incubation success of sturgeon eggs, the proposal does not make a compelling argument nor present sufficient evidence that this problem is caused by sedimentation (as ISRP noted last year, also). No evidence is presented that hard substrate is actually used for egg attachment here or elsewhere. A previous study of velocities in the vicinity of the proposed work has not been published except as an abstract, and no summary data from it are presented in the proposal. Other studies were noted in the rationale section, but they were not used directly as supporting evidence for the importance of sedimentary substrate in this case. The proposal assumes that the sediment hypothesis for lack of incubation success is correct without suggesting any alternative hypotheses that might be addressed by the research. What if sediment dynamics has nothing to do with reproductive success? If it does not, then the benefit to fish and wildlife from the detailed sediment study could be nil, regardless of the opinions in the BiOp, Recovery Plan, and Subbasin Summary. The tribe should perhaps pursue other aspects of the effort before implementing this large task. The sediment model can be used to measure turbulence, sediment transport, etc., which need to be better tied to the biological needs of the sturgeon.

Other criteria are met. Agency cooperation and coordination now seem excellent. Objectives and tasks are clear and well organized. Methods are ok, but brief. Monitoring and evaluation are addressed briefly. Personnel resumes are excellent. Information transfer got first attention in the objectives (web site).


Recommendation:
High Priority (Phase 1)
Date:
Mar 16, 2001

Comment:

This is a multi-phase project that should be funded and implemented in a stepwise fashion. Phase 1, development of the model, should be completed and presented to CBFWA prior to funding any channel modifications. The model will complement other sturgeon restoration activities in the subbasin, however, the habitat fixes may be out of sync with other activities. Some portions of the model may be excessive and unnecessary for decision making (i.e.. 3D sediment transport imagery).
Recommendation:
Fund
Date:
Apr 6, 2001

Comment:

Fundable, the ISRP concerns are addressed. This is a good response, bolstered by numerous literature references. The overall program's work has a logic of accumulated evidence that has progressed to the hypothesis for egg suffocation on shifting sediments. The sediment hypothesis seems sufficiently supported by solid evidence and anecdotal observations to warrant further testing. Other hypotheses may still emerge but none are fully formulated yet.

In the response, the authors often lift an entire section from a report that could have been summarized in the original proposal (e.g. the sections on sediment dynamics on recruitment failure, egg attachment on substrate, and the velocity data). If the authors had provided this complete information in the original proposal these review questions would not have arisen.


Recommendation:
Fundable
Date:
May 30, 2001

Comment:

Agree with ISRP and CBFWA recommendation to fund and will meet BiOp requirements.
Recommendation:
Fund
Date:
Oct 19, 2001

Comment:


Recommendation:
Fund
Date:
Mar 25, 2002

Comment:

Bonneville will fund... as recommended to meet requirements of the USFWS's BiOp as described in the Action Agencies 2002 Annual Implementation Plan.
Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

Accruals will be a little low. Phase 2 - Contingent on modeling results and recovery team decisions. Timing of 04 work dependant on pending decisions: sponsor gave best estimate. COE obligation also.
Recommendation:
Date:
Sep 20, 2003

Comment:


REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$260,000 $324,130 $324,130

Sponsor comments: See comment at Council's website