FY 2002 Mountain Columbia proposal 199404900

Section 1. Administrative

Proposal titleImproving the Kootenai River Ecosystem
Proposal ID199404900
OrganizationKootenai Tribe of Idaho (KTOI)
Proposal contact person or principal investigator
NameCharlie Holderman
Mailing addressP.O. Box 1269 Bonners Ferry, ID 83805
Phone / email2082673620 / Cholderman@kootenai.org
Manager authorizing this projectSue Ireland, KTOI
Review cycleMountain Columbia
Province / SubbasinMountain Columbia / Kootenai
Short descriptionIdentify the most appropriate and effective management strategies to enhance aquatic biota in the Kootenai River Ecosystem and recover native species assemblages across multiple trophic levels.
Target specieswhite sturgeon, burbot, kokanee, Kootenay Lake redband trout, Westslope cutthroat trout, bull trout, and the periphyton and macroinvertebrate communities within the Kootenai River
Project location
LatitudeLongitudeDescription
48.64 -115.59 Kootenai subbasin
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription

Section 2. Past accomplishments

YearAccomplishment
2000 Bauer, S. B. 2000. Kootenai River Tributaries Water Quality Summary, 1998-2000. Pocketwater, Inc. Boise, ID. Prepared for the Kootenai Tribe of Idaho.
2000 Holderman, C. E. 2000. Field experiments to assess white sturgeon egg development and hatching success in the Kootenai River. In prep. Kootenai Tribe of Idaho report to Bonneville Power Administration (Contract No. 95BI40364). Portland, OR.
2000 Anders, P.J., D.L. Richards, and M.S. Powell. The first endangered white sturgeon population (Acipenser transmontanus):Repercussions in an altered large-river-floodplain ecosytem. In: Proceedings of 130th Annual Meeting of the American Fisheries Society
2000 Korman, J. and C.W. Walters. 1999. Summary of the Kootenai River adaptive environmental assessment modeling exercise. Ecometric Research, Inc. and University of British Columbia. Vancouver, B.C. Prepared for the Kootenai Tribe of Idaho.
2000 Century West Inc. Comprehensive Water Quality Monitoring Plan for the Kootenai River Basin, in British Columbia, Montana, and Idaho.
1999 Bauer, S. B. 1999. Kootenai River Water Quality Summary 1997/1998. Boise, ID. Prepared for Kootenai Tribe of Idaho.
1998 EcoAnalysts, Inc. 1998. Stream habitat survey of Long Canyon, Parker, and Trout Creeks: Tributaries to the Kootenai River, Idaho, with special consideration of kokanee spawning habitat and enhancement potential. Moscow, ID. Prep. for Kootenai Tribe.
1998 EcoAnalysts, Inc. 1998. Stream biota survey of Long Canyon, Parker, and Trout Creeks: Tributaries to the Kootenai River, Idaho, with emphasis on macroinvertebrate and fish communities. Moscow, ID. Prep. for Kootenai Tribe.
1998 Richards, D.L. 1998. Kootenai River macroinvertebrate investigation. Kootenai Tribe of Idaho report to Bonneville Power Administration (Contract No. 95BI40364). Portland, OR.
1997 Richards, D.L. 1997. Kootenai River biological baseline status report. Kootenai Tribe of Idaho report to Bonneville Power Administration (Contract No. 95BI40364). Portland, OR.
1996
1995-2000 DEMONSTRATED RESEARCH AND MANAGEMENT CONTRIBUTIONS
2000 (1998-Present) Analysis of age-class-structure, growth, movements, and fish community dynamics in the lower Kootenai River and its tributaries.
2000 (1998-2000) Analysis of seasonal dietary preferences of non-game fishes in the lower Kootenai River in Idaho.
2000 (1996-Present) Successful application of Adaptive Environmental Assessment process to identify and prioritize ecosystem restoration and management strategies, and develop Kootenai River ecosystem simulation model.
2000 (1996-Present) Formation of the International Kootenai River Ecosystem Restoration Team (IKRERT) (an international, inter-agency research and management team) to develop and guide ecosystem restoration research and management.

Section 3. Relationships to other projects

Project IDTitleDescription
198806400 Kootenai River White Sturgeon Studies and Conservation Aquaculture Technical, Labor, and Data Interchange
198806500 Kootenai River Fisheries Recovery Investigations Technical and Data Interchange
Reconnection of Floodplain Slough habitat to the Kootenai River (KTOI) New project to evaluate potential slough sites for reconnection, estimate the ecological benefits, and implement reconnection.
Implement Floodplain Operational Loss Assessement, Protection, Mitigation, and rehabilitation on lower Kootenai River Ecosystem (KTOI) New project.
199500400 Mitigation for the Construction and Operation of Libby Dam (MWFP) Implements watershed-based enhancement and fishery recovery actions to mitigate the losses caused by hydropower generation
199608702 Focus Watershed Coordination in the Kootenai River Watershed (MWFP) Fosters grass-roots public involvement and interagency cooperation for habitat restoration.
Assess Feasibility of Enhancing White Sturgeon Spawning Habitat, Kootenai River, Idaho (KTOI; USGS) New project to design scenarios and assess feasibility to enhance white sturgeon spawning substrate.

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Initiate NEPA permitting process to accommodate Kootenai River ecosystem restoration research, monitoring and management activities. a. Provide all required NEPA documentation 2 $10,000 Yes
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Continue NEPA process 2003 2003 $10,000
Outyear budgets for Planning and Design phase
FY 2003FY 2004
$30,000$20,000

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Initiation of a controlled, large-scale nutrient enhancement effort in the mainstem Kootenai River, downstream of Montana-Idaho border. 2003 2006 $2,875,000
Outyear budgets for Construction and Implementation phase
FY 2003FY 2004FY 2005FY 2006
$125,000$1,250,000$750,000$750,000

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Objective 1. Mitigate costs of nutrient addition in the Kootenai River ecosystem (Kootenay Lake). Task 1.1. Fully fund fertilizer acquisition costs to implement proven nutrient addition to improve the Kootenai River ecosystem (Kootenay Lake). Requires: 1) 317.0 tons of 10-34-0 fertilizer; 2) 624.9 tons 28-0-0 fertilizer Ongoing $194,767 Yes
Objective 2. Mitigate costs of nutrient addition in Arrow Reservoir. Task 2.1. Fully fund fertilizer acquisition costs to implement proven nutrient addition to enhance productivity of Arrow Reservoir. Requires: 1) 355.3 tons of 10-34-0 fertilizer; 2) 702.7 tons 28-0-0 fertilizer Ongoing $213,923 Yes
Further fertilizer specifications available from subcontractor (BCMELP, Nelson, BC.) $0
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Operation and Maintenance of nutrient holding tanks and associated apparatus, and, delivery of fertilizer to in-river site. 2004 2006 $75,000
Outyear budgets for Operations and Maintenance phase
FY 2003FY 2004FY 2005FY 2006
$410,000$410,000$410,000$410,000

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Test the feasibility of a Kootenai River controlled nutrient addition experiment. a. Perform in-river controlled nutrient addition experiments (i.e. mesocosm) at several key locations on the Kootenai River. 2 $93,660 Yes
2. Evaluate the productivity within the Kootenai River before and after a large-scale nutrient supplementation experiment if warranted by results of mesocosm experiments. a. Monitor algal biomass b. Monitor chlorophyll a concentration c. Monitor algal species composition d. Monitor macroinvertebrate biomass e. Monitor macroinvertebrate species f. Monitor fish density and biomass g. Monitor fish species/community dynamics 5 $170,981 Yes
3. Monitor key water quality parameters, with an emphasis on macro-nutrients. a. Take monthly water quality samples and analyze for macro-nutrients. 5 $27,560
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Continue biomonitoring and macro-nutrient analyses in Kootenai River 2003 2006 $440,000
2. Continue mesocosm nutrient supplementation experiments 2003 2004 $50,000
Outyear budgets for Monitoring and Evaluation phase
FY 2003FY 2004FY 2005FY 2006
$290,000$290,000$290,000$290,000

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 3; 1 PTE $92,006
Fringe 33 % Salaries $30,362
Supplies Office, Laboratory, boats, gas $10,000
Travel BPA, NPPC, IKRERT, NABS $7,500
Indirect 57.6% of Personnel and Fringe $70,483
Capital None $0
NEPA Initiate Process $10,000
PIT tags # of tags: None $0
Subcontractor EcoAnalysts, Inc.; Free Run Aquatic Resources, Spokane Tribal Lab, $81,850
Subcontractor BCMELP (Fertilizer acquisition costs only) $408,690
$710,891
Total estimated budget
Total FY 2002 cost$710,891
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$710,891
FY 2002 forecast from 2001$339,000
% change from forecast109.7%
Reason for change in estimated budget

A considerable change in the estimated budget for this project has occurred, accounted for by costs associated with O&M Objectives 1 and 2, and associated tasks (see Section 6 of 10, Part 1 of this proposal). Increase in estimated budget is due to mitigation costs of nutrient addition in the Kootenai River ecosystem (Kootenay Lake), as mandated by the 1995 and Draft 2000 USFWS Biological Opinions, due to lost system productivity caused by construction and operation of Libby Dam. Further increased budget estimate is due to mitigation costs of nutrient addition in Arrow Reservoir, as mandated by the 1995 and Draft 2000 USFWS Biological Opinions, to compensate for lost Arrow Reservoir productivity caused by the "Libby-Arrow swap" water management strategy. For a more detailed explanation and justification for increased budget estimate, see Part 2 of this proposal, text provided under Objectives 8 and 9.

Reason for change in scope

A considerable change in the estimated scope for this project has occurred, accounted for by addition of O&M Objectives 1 and 2, and associated tasks (see Section 6 of 10, Part 1 of this proposal). These objectives were included to satisfy recommendations in the 1995 and Draft 2000 USFWS Biological Opinions, NWPPC FWP language (Measures 10.6C and 2.2G.1), and IPC comments concerning FY2000 submission of these objectives (as Project 20009, In: NWPPC Document ISRP-2000-2A, pg. 191). For a more detailed explanation and justification for change in scope, see Part 2 of this proposal, text provided under Objectives 8 and 9.

Cost sharing
OrganizationItem or service providedAmountCash or in-kind
Idaho Fish & Game Dept. Technical & labor support; data exchange $5,000 in-kind
British Columbia Ministry of Environment Technical & labor support; data exchange; 1 complete mesocosm $15,000 in-kind
Kootenai River Network Grant acquisitions; technical support; data exchange $10,000 cash
Montana Dept. Fish, Wildlife & Parks Technical & labor support; data exchange $2,500 in-kind

Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable - no response required
Date:
Feb 9, 2001

Comment:

Fundable, but with comments for consideration by investigators (no ISRP response needed). This proposal and project remain the broadest of the several Kootenai River projects. The attention is to the whole ecosystem rather than to the more limited fish species components of other studies. Various components of the ecosystem either are or have been studied by this project or others. Integration has been accomplished by cooperative development of an ecosystem model and an adaptive management process. The project is strongly cast as leading up to potential whole-ecosystem fertilization of the Kootenai River, in parallel with Canadian whole ecosystem fertilization projects for Kootenay Lake and Arrow Lake. The study has also become the vehicle for BPA to pay for fertilizer for the Canadian fertilization projects.

The lack of focus and unclear direction perceived last year by the ISRP has largely been corrected. There is now an excellent scientific background section, with plenty of scientific references, some from this study. The information is well organized by topic, and the evidence for environmental problems is well summarized. The proposal ties this work to all relevant plans, including the FWP, the Subbasin Summary, the federal Biological Opinion and Recovery Plan for sturgeon and other species, CBFWA's multi-year implementation Plan, and the local River Network. Specific sections of these plans are cited. The proposal emphasizes the role of this project in overall, long-term, cooperative planning for improving the Kootenai River ecosystem from the Montana border to (and into) Kootenay Lake. With fertilization as a long-range objective (based on results of prior work), the project logically proposes use of mesocosms to first test fertilization on a small scale. Responsiveness of the lower trophic levels at the mesocosm level will foster confidence that whole-ecosystem fertilization could work to improve the system productivity.

The relationships to other projects funded by BPA are clearly presented. However, more detail about relevant non-BPA projects would have been informative. The project history is good, with good references, a good progression of logic, and a good sense of progressively integrating the accumulated knowledge of the river basin. There are well-written objectives keyed to major aspects of the work, coupled with good tasks for each objective. Methods are well described at an appropriate level of detail. There is a great deal of monitoring, with good rationale. There are no problems with facilities or personnel. Information transfer is especially good, with annual meetings.

From the evidence presented, there should be a good benefit to fish and wildlife from this project's gradual testing of the value of fertilization, and eventual implementation. The value of fertilization in Canada seems to have been proven, and the expense for fertilization justified scientifically. Whether this is the best administrative route for the purchases, is not the ISRP's responsibility.

However, the work and the ecosystem still present a confused and confusing situation. The proposal presumably seeks to assess limiting factors below Libby Dam but appears to discount all options other than nutrient limitation (isn't flow regime driven by power peaking?). Objectives are to evaluate primary and secondary productivity, etc. before and "potentially after" large-scale nutrient supplementation, without giving criteria for deciding whether to proceed with that supplementation. Yet >1/2 of budget is for fertilizer, suggesting that the decision regarding nutrient limitation as the key factor in the basin has already been made and data gathering may be window-dressing. Much of the fertilization would be done in Arrow Reservoir although that water body is only mentioned in 1-2 paragraphs and is actually outside the lower Kootenai River. The proposal states that the 1995 and draft 2000 NMFWS BiOp "mandates" the fertilization. Yet, for the reach at issue, the fertilization is not yet a proven key factor. It is just a management option for which two more years of in-depth work should provide the data to make the decision whether to implement.


Recommendation:
High Priority
Date:
Mar 16, 2001

Comment:

The benefits from this project are unknown at this time. A key to this project is to measure the benefits of nutrient supplementation.
Recommendation:
Fund
Date:
Apr 6, 2001

Comment:

Fundable, but with comments for consideration by investigators (no ISRP response needed). This proposal and project remain the broadest of the several Kootenai River projects. The attention is to the whole ecosystem rather than to the more limited fish species components of other studies. Various components of the ecosystem either are or have been studied by this project or others. Integration has been accomplished by cooperative development of an ecosystem model and an adaptive management process. The project is strongly cast as leading up to potential whole-ecosystem fertilization of the Kootenai River, in parallel with Canadian whole ecosystem fertilization projects for Kootenay Lake and Arrow Lake. The study has also become the vehicle for BPA to pay for fertilizer for the Canadian fertilization projects.

The lack of focus and unclear direction perceived last year by the ISRP has largely been corrected. There is now an excellent scientific background section, with plenty of scientific references, some from this study. The information is well organized by topic, and the evidence for environmental problems is well summarized. The proposal ties this work to all relevant plans, including the FWP, the Subbasin Summary, the federal Biological Opinion and Recovery Plan for sturgeon and other species, CBFWA's multi-year implementation Plan, and the local River Network. Specific sections of these plans are cited. The proposal emphasizes the role of this project in overall, long-term, cooperative planning for improving the Kootenai River ecosystem from the Montana border to (and into) Kootenay Lake. With fertilization as a long-range objective (based on results of prior work), the project logically proposes use of mesocosms to first test fertilization on a small scale. Responsiveness of the lower trophic levels at the mesocosm level will foster confidence that whole-ecosystem fertilization could work to improve the system productivity.

The relationships to other projects funded by BPA are clearly presented. However, more detail about relevant non-BPA projects would have been informative. The project history is good, with good references, a good progression of logic, and a good sense of progressively integrating the accumulated knowledge of the river basin. There are well-written objectives keyed to major aspects of the work, coupled with good tasks for each objective. Methods are well described at an appropriate level of detail. There is a great deal of monitoring, with good rationale. There are no problems with facilities or personnel. Information transfer is especially good, with annual meetings.

From the evidence presented, there should be a good benefit to fish and wildlife from this project's gradual testing of the value of fertilization, and eventual implementation. The value of fertilization in Canada seems to have been proven, and the expense for fertilization justified scientifically. Whether this is the best administrative route for the purchases, is not the ISRP's responsibility.

However, the work and the ecosystem still present a confused and confusing situation. The proposal presumably seeks to assess limiting factors below Libby Dam but appears to discount all options other than nutrient limitation (isn't flow regime driven by power peaking?). Objectives are to evaluate primary and secondary productivity, etc. before and "potentially after" large-scale nutrient supplementation, without giving criteria for deciding whether to proceed with that supplementation. Yet >1/2 of budget is for fertilizer, suggesting that the decision regarding nutrient limitation as the key factor in the basin has already been made and data gathering may be window-dressing. Much of the fertilization would be done in Arrow Reservoir although that water body is only mentioned in 1-2 paragraphs and is actually outside the lower Kootenai River. The proposal states that the 1995 and draft 2000 NMFWS BiOp "mandates" the fertilization. Yet, for the reach at issue, the fertilization is not yet a proven key factor. It is just a management option for which two more years of in-depth work should provide the data to make the decision whether to implement.


Recommendation:
Fundable
Date:
May 30, 2001

Comment:

This project should be funded as described. Bonneville has no additional comments on this project.
Recommendation:
Fund
Date:
Oct 19, 2001

Comment:


Recommendation:
Fund
Date:
Mar 25, 2002

Comment:

Bonneville will fund... as recommended to meet requirements of the USFWS's BiOp as described in the Action Agencies 2002 Annual Implementation Plan. However, we note the following clarification on project 199404900 Improving the Kootenai River Ecosystem. This project contains elements that implement the USFWS BiOp and one element that is not within the scope of the BiOp. Objective 2, Arrow Reservoir fertilization will be funded, but not as a USFWS BiOp requirement. We believe that after the initial three year funding cycle Arrow Reservoir fertilization should be reviewed for a substantial cost share from B.C. Hydro before it is reconsidered for funding.
Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

Agreement with Canada - one task will be billed in late 03. Big jump potential in 04. Some potential capital elements
Recommendation:
Date:
Sep 20, 2003

Comment:


REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$1,614,000 $1,614,000 $1,614,000

Sponsor comments: See comment at Council's website