FY 2002 Mountain Snake proposal 28005

Section 1. Administrative

Proposal titleAssessment of spring/summer chinook salmon habitat within the Salmon River Subbasin.
Proposal ID28005
OrganizationUSDA Forest Service, USDI Bureau of Land Management, U.S. Geological Survey, Utah State University (USFS/BLM/USGS/USU)
Proposal contact person or principal investigator
NameJeff Kershner
Mailing addressUtah State University, UMC 5210 Logan, UT 84322
Phone / email4357972500 / kershner@cc.usu.edu
Manager authorizing this projectJeff Kershner
Review cycleMountain Snake
Province / SubbasinMountain Snake / Salmon
Short descriptionEvaluate and compare attributes of streams utilizied and not utilized by chinook salmon within the subbasin. Evaluated habitat characteristics would describe low gradient stream segments which foster chinook salmon production.
Target speciesSpring/Summer chinook salmon -- Snake River ESU
Project location
LatitudeLongitudeDescription
45.15 -115.8 Secesh Creek Watershed (stratified -- occupied/unoccupied, random locations throughout basin)
44.54 -115.74 South Fork Salmon Watershed (stratified -- occupied/unoccupied, random locations throughout basin)
44.79 -115.53 Johnson Creek Watershed (stratified -- occupied/unoccupied, random locations throughout basin)
44.54 -115.39 Sulfur Creek Watershed (stratified -- occupied/unoccupied, random locations throughout basin)
45.14 -115.66 Elk Creek Watershed (stratified -- occupied/unoccupied, random locations throughout basin)
44.43 -115.35 Bear Valley Watershed (stratified -- occupied/unoccupied, random locations throughout basin)
44.39 -115.16 Marsh Creek Watershed (stratified -- occupied/unoccupied, random locations throughout basin)
Salmon Creek Watershed (stratified -- occupied/unoccupied, random locations throughout basin)
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA
Habitat RPA Action 155

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS Action 155 NMFS BPA, working with BOR, the Corps, EPA, and USGS, shall develop a program to 1) identify mainstem habitat sampling reaches, survey conditions, describe cause-and- effect relationships, and identify research needs; 2) develop improvement plans for all mainstem reaches; and 3) initiate improvements in three mainstem reaches. Results shall be reported annually.

Section 2. Past accomplishments

YearAccomplishment
1998 Began pilot project intended to evaluate effectiveness of grazing standands within the Biological Opinion on bull trout and steelhead.
1999 Began large scale application of protocol. Evaluated both grazed and pristine sights (Project Report, USFS funding -- $100,000)
2000 Increased size and area of sampling, refined metrics (Project report, USU,USFS and BLM funding -- $250,000)
2001 Continued Sampling protocol, collect data from random sites throughout the Columbia River Basin (USU,USFS and BLM funding --$630,000). Quality control/Quality Assurance results in preparation for peer reviewed publication.

Section 3. Relationships to other projects

Project IDTitleDescription
19960200 Comparative survival rate study of hatchery pit tagged chinook and comparitive survival oversight We will use generated data to determine the realtionship between habitat and chinook numbers/presence
8712702 Comparative Survival Rate Study We will use generated data to determine the realtionship between habitat and chinook numbers/presence
26019 South Fork Clearwater, Selway, and Salmon River Basins monitoring and evaluation of spring/summer chinook salmon outplant program. We will use generated data to determine the realtionship between habitat and chinook numbers/presence
9102800 Monitoring smolt migration of wild Snake River spring/summer chinook salmon We will use generated data to determine the relationship between habitat and chinook numbers/presence
9107300 Idaho natural production monitoring and evaluation program We will use generated data to determine the relationship between habitat and chinook numbers/presence
8909800 Idaho supplementation study We will use generated data to determine the relationship between habitat and chinook numbers/presence
8909802 Idaho supplementation study We will use generated data to determine the relationship between habitat and chinook numbers/presence
8909803 Salmon supplementation studies in Idaho Rivers -- Sho-Ban tribes We will use generated data to determine the realtionship between habitat and chinook numbers/presence

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1) Determine objective criteria for quality chinook salmon habitat. Relate these criteria to other stream habitat data collected throughout the basin. a) Evaluate and summarize current data determining survival rates and populations of spring/summer chinook salmon within subwatersheds within the Salmon River Subbasin. 1 $5,000
b) determine sampling scheme that would allocate sampling effort within each subwatershed and as control - plot spatial locations of samples with GIS. Evaluate landuse patterns within the subwatersheds through the use of GIS 1 $2,500
c) Use appropriate statistical methods to relate habitat characteristics to chinook salmon populations and survival rates. Because we have previous sampled this subbasin on a random basis, a logistic model for habitat occupancy may be possible. 2 $2,500
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Planning and Design phase

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1) Collect and analyze data necessary to evaluate spring/summer chinook habitat quality. a) Field crews will be dispatched to collect habitat/productivity/insect data from identified sites 1 $70,000
b) insect samples with be identified 2 $4,000
c) all data will be entered in a machine readable format 2 $2,750
d) habitat variables will be correlated to population data 2 $4,000
e) data would be evaluated for comparison of chinook salmon habitat quality (ability to produce fish) at the subwatershed, watershed, basin, and regional scale. 2 $20,000
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
2003 2003 $0
Outyear budgets for Construction and Implementation phase

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1) Quality control data collected a) resample at least five sites surveyed to evaluate quality of data collected. 1 $5,000
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
2003 2003 $0
Outyear budgets for Monitoring and Evaluation phase

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: field crew (3), statistician, biologist, invertebrate/periphyton identification $90,000
Fringe $0
Supplies Computers, GPS, paper, data loggers $5,000
Travel Travel/perdiem $5,000
Indirect 15% $15,750
$115,750
Total estimated budget
Total FY 2002 cost$115,750
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$115,750
FY 2002 forecast from 2001$0
% change from forecast0.0%
Reason for change in estimated budget

Change from full implementation to 1 year pilot project

Reason for change in scope

Recommendation by review panel

Cost sharing
OrganizationItem or service providedAmountCash or in-kind
USFS Collection of similar data at other random locations throughout the Salmon River and other Subbasins. Office space/partial salaries/equipment. $500,000 in-kind
Utah State University Office space/partial salaries/grad students $50,000 in-kind
BLM Paying for the collection of similar data at other locations throughout the watershed $50,000 in-kind
USGS Partial salaries/project oversight $10,000 in-kind

Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Sep 28, 2001

Comment:

A response is needed. The main project goal would be to link an extensive habitat database to present population status information for chinook populations. These two companion project proposals are ambitious and attempt to look at habitat attributes and salmonid distributions at finer scales than are typically investigated. This will be a very intensive examination of potentially important habitat elements; all presently known stream-salmonid habitat variables (and some other variables, such as macroinvertebrates and periphyton) seem to be included in the study. Measurements will extend back into the riparian zone.

As these two proposals are extremely similar, sharing staff, methods, and so on, we recommend that the study site be limited to either the Grande Ronde, or the Salmon River subbasin, and that a single proposal be developed as a pilot study to evaluate existing data, data collection methods, and the proposed habitat model. The sponsors need to show full coordination of proposal development with research presently underway with fish habitat and spring/summer chinook salmon at the study site of choice.

Although the proposals are clearly written and their authors are recognized leaders in habitat research, reviewers felt that a large volume of data, similar to what is sought here, presently exists in agency and researcher files. The subbasin summaries note numerous aquatic assessments already completed. If the proposal described how it would fill a significant void left by previous assessments, it would be more compelling. Additionally, reviewers believe the reasons for differences in chinook smolt production among subwatersheds are currently more clearly understood than the proposal would suggest.

The proposals are heavy on habitat sampling methodology but provide insufficient explanation of what biological data for salmonids will be obtained (is the data even available for Task A?) and how relationships between the biological data and habitat variables will be analyzed. Out-of basin factors could have a significant influence on salmon presence and abundance, yet these are not accounted for. Tasks A and B are unclear and require much further elaboration.

Stream temperature is listed in Table 1 as a variable to be measured in the field, but the methods are not shown. The temperature regime will have to be analyzed for each site, and the methods for measurement and analysis should be explained. Except for the latter shortcoming, the project is exemplary, and much information of kinds sorely needed in chinook habitat management should result.


Recommendation:
Recommended Action
Date:
Nov 30, 2001

Comment:

Although this proposal has been identified as a pilot project by the sponsor, select components are presently implemented through a USFS project that exists in the upper Columbia Basin. In addition, the sponsor indicated that the USFS spends $500,000/year collecting such data. Although the USFS has been in communication with the IDFG, the USFS has not discussed the proposed work with the SBT due in part to the fact that the proposed work will be performed on federal lands. Due to the innovative nature of the project the reviewers recommend that the project sponsor submit the proposal for consideration in the Innovative Project process.
Recommendation:
Do Not Fund
Date:
Dec 21, 2001

Comment:

Not fundable. The main project goal would be to link an extensive habitat database to existing population status information for chinook populations, endeavoring to look at habitat attributes and salmonid distributions at finer scales than are typically investigated. This would be a very intensive examination of potentially important habitat elements; all presently known stream-salmonid habitat variables (and some other variables, such as macroinvertebrates and periphyton) seem to be included in the study. Measurements would extend back into the riparian zone.

Although the proposals are clearly written and their authors are recognized leaders in habitat research, reviewers felt that a large volume of data, similar to what is sought here, presently exists in agency and researcher files. The subbasin summaries note numerous aquatic assessments already completed. Additionally, reviewers believe the reasons for differences in chinook smolt production among subwatersheds are currently more clearly understood than the proposal would suggest. . At the suggestion of the ISRP, the authors in their response propose a pilot study intended to relate the presence of chinook salmon to habitat conditions in Snake River tributaries. A full proposal including a budget for the pilot study was not provided. The cost for the project was set at $100,000 but further details were not provided. Even for the pilot study, the authors have not satisfactorily addressed major shortcomings that were a problem with the original proposal. The original proposal was largely a detailed description of habitat methodology and the authors' responses to the ISRP's questions have done little to obviate this weakness.

This project has little chance of producing useful information. In particular, the biological component of the research is weak. The authors have failed to adequately address the ISRP's question concerning the biological dataset that will be used. The proposal would be stronger if it specified what fish dataset was intended for use, and how better measurement of habitat parameters would help that dataset yield new relationships. A critical element of the proposed research is the definition of occupied and unoccupied sites. The authors do not provide operational definitions of these terms. Furthermore, the approach of comparing habitat that is "occupied" with that "not occupied" may not be meaningful because the rearing habitat is not close to being fully seeded. Presence or absence of juvenile chinook salmon depends not only on habitat conditions but also on other factors including whether successful spawning of adults had occurred in the area, whether a significant storm event occurred during incubation, and, for naturally produced fish, whether fish have been stocked in the area. The authors do not consider these and other out-of-basin factors in their proposal.

What would be the measure of "run strength" or "molt outmigration?" What is the nature of the "index of chinook populations" that would be derived? Tasks A and B remain unclear and would require much further elaboration.

The authors could develop their approach more fully and submit future proposals. Subsequent proposal should more specifically address land-use-related habitat hypotheses such as that recently identified by Paulsen and Fisher (Transactions of the American Fisheries Society, May 2001) regarding chinook parr-to-smolt survival. The panel suggests that proponents consider making future aquatic habitat data measurement protocols consistent with recommendations provided in:

Johnson, D. H., N. Pittman, E. Wilder, J. A. Silver, R. W. Plotnikoff, B. C. Mason, K. K. Jones, P. Roger, T. A. O'Neil, C. Barrett. 2001. Inventory and Monitoring of Salmon Habitat in the Pacific Northwest - Directory and Synthesis of Protocols for Management/Research and Volunteers in Washington, Oregon, Idaho, Montana, and British Columbia. Washington Department of Fish and Wildlife, Olympia, Washington. 211 pp.


Recommendation:
Date:
Feb 1, 2002

Comment:

Statement of Potential Biological Benefit to ESU
Benefits are indirect. Project will provide baseline data on conditions required to promote salmonid populations across the Salmon River basin. Methods are precisely defined as project is ongoing (other funding sources). No direct or immediate impact on fish, but project will provide important information on habitat differences and their effects on chinook populations, if any.

Comments
This project is important because it addresses some of the fundamental stream ecology questions we need to investigate (such as primary productivity) in order to determine habitat quality, and relate the quality with fish distribution and abundance. This work will help with future questions about population dynamics, protection and restoration.

Already ESA Req? No

Biop? Yes

Comments on Project 27007 (Blue Mountain), which has been merged with Project 28005:

Statement of Potential Biological Benefit to ESU
Benefits are indirect. Project would evaluate and compare attributes of streams utilized and not utilized by chinook salmon within the subbasin. Evaluated habitat characteristics would describe low gradient stream segments which foster chinook salmon production.

Comments
This project #27007 has been merged with project #28005 in the Mountain Snake Province. The main project goal is to test the null hypothesis that there are no significant differences between habitat utilized & not utilized by chinook. The alternative hypothesis is that there are significant differences. Suggest that the project proponents 'better' link the extensive habitat database on this subject to evaluating present population status info for chinook populations as part of this proposal.

Already ESA Req? No

Biop? Yes


Recommendation:
C
Date:
Feb 11, 2002

Comment:

Do not recommend. The project could be reconsidered when a regional RM&E plan is completed and the need for the project can be properly assessed.

BPA RPA RPM:
--

NMFS RPA/USFWS RPM:
155


Recommendation:
Do Not Fund
Date:
Apr 19, 2002

Comment: