FY 2002 Mountain Snake proposal 198335000

Section 1. Administrative

Proposal titleNez Perce Tribal Hatchery
Proposal ID198335000
OrganizationNez Perce Tribe (NPT)
Proposal contact person or principal investigator
NameR. Ed Larson
Mailing addressP.O. Box 365 Lapwai, ID 83540
Phone / email2088437320 / edl@nezperce.org
Manager authorizing this projectJaime A. Pinkham
Review cycleMountain Snake
Province / SubbasinMountain Snake / Clearwater
Short descriptionComplete construction and begin operation of Nez Perce Tribal Hatchery supplementation program to assist in the recovery and restoration of non-listed spring chinook and ESA listed Snake River fall chinook in the Clearwater Basin.
Target speciesSpring Chinook Fall Chinook
Project location
LatitudeLongitudeDescription
46.522 -115.6565 Central Incubation and Rearing Facility (CIRF), Allotment 1705, Clearwater River at Cherrylane, ID
46.228 -116.852 Sweetwater Springs Satellite Rearing Facility, Waha, ID
46.436 -115.809 North Lapwai Valley Satellite Rearing/Acclimation/Release Facility, Spaulding, ID
45.888 -115.6285 Newsome Creek Rearing/Acclimation/Release Facility, S.F. Clearwater, near Elk City, ID
46.3883 -115.639 Yoosa/Camp Rearing/Acclimation/Release Facility, Lolo Creek, near Pierce, ID
46.029 -115.9752 Lukes Gulch Rearing/Acclimation/Release/ Facility, S.F. Clearwater, near Stites, ID
46.0858 -115.5333 Cedar Flats Acclimation/Release Facility, lower Selway River, near Fenn Ranger Station
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA
Hatchery RPA Action 169

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS/BPA Action 177 NMFS In 2002, BPA shall begin to implement and sustain NMFS-approved, safety-net projects.

Section 2. Past accomplishments

YearAccomplishment
1992 Developed the NPTH Master Plan
1992 Completed a Genetic Risk Assessment for the NPTH Master Plan.
1993 Completed the Selway River Genetic Resource Risk Assessment
1993 First outplant of 114,000 spring chinook parr in upper Meadow Creek, Selway River. Repeated in 1994, 292,000 & 1999, 177,000. Evaluated parr supplemenation release strategies and post-release survival. Results are discussed in NPTH M&E FYO2 proposal.
1994 Completed NPTH Pre-design Study.
1995 Completed supplement to NPTH Master Plan. Revised Master Plan in accordance with results from genetic risk assessments, the draft M&E plan and predesign studies
1995 Completed cultural and archaeological surveys at eight proposed facility sites.
1996 Completed Monitoring and Evaluation Plan, a comprehensive ecosystem based M&E plan to assess interaction between supplemention releases and natural fish; the plan presents a means to evaluate success of NPTH supplementation.
1996 Completed Broodstock Management Plan; the plan discusses genetic monitoring and evaluation based on population sizes as related to supplementation strategies & recommends mating protocols to minimize genetic divergence and loss of local adaptation.
1997 Completed the Final Environmental Impact Statement and Record of Decision.
1997 Received the Biological Opinion for NPTH.
1997 NPTH was evaluated successfully for compliance with the NPPC 3-Step Process. Step 2 approval authorized proceeding with final design, and construction cost estimates.
1997 Began spring chinook broodstock development. Adult spring chinook, parr and smolts were outplanted in NPTH streams.
2000 Presented NPTH Final Design documents (phase I of II) to NPPC. Step-3 authorized construction based on reduced fish production and temporary, experimental satellites at 2 sites. Construction costs not to exceed $16 million.
2001 Construction to be completed October, 2001 at 6 of 7 sites; Sweetwater Springs site to be completed by December 2001. All construction completed 8 months ahead of schedule.

Section 3. Relationships to other projects

Project IDTitleDescription
198335003 NPTH Monitoring and Evaluation Assesses effectiveness of NPTH Supplmentation to restore natural spring and fall chinook populations in the Clearwater River and its tributaries.
198335004 NPTH Planning and Design Develop a Coho Master Plan recommending methods to incorporate coho production in NPTH.
199801005 Fall Chinook Acclimation Project Assist in providing broodstock for NPTH and jointly contribute towards rebuilding natural fall chinook production and ESA delisting in the Mountain Snake Province.
198335005 NPTH Construction Contract (contracted directly through BPA) Management oversight and construction of NPTH as directed by NPPC Step-3 approval May 17. 2000.
2984 Rehabilitate Newsome Creek Watershed Enhance quality and quantity of fish habitat in Newsome Creek watershed where NPTH spring chinook supplementation occurs through road inventory, road obliteration, and channel realignment study that recommend improved management practices.
2509 Protect and Restore Lolo Creek Watershed Enhance quality and quantity of fish habitat in Lolo Creek watershed where NPTH spring chinook supplementaion occurs through road obliteration, channel realignment, riparian revegetation, protective riparian fencing, and off-stream cattle water devices.
-200036 Protect and Restore Mill Creek Enhance quality and quantity of fish habitat in Mill Creek watershed where NPTH spring chinook supplementaion occurs through riparian fencing, road inventory, road relocation, and corral relocation and off-stream water structures.

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Seek approval of Clearwater Coho Master Plan a. Participate in NPPC Step 1 review of master plan 0.5 $130,000
2. Begin NPPC Step 2 - NEPA (through BPA) a. BPA to develop the necessary NEPA documents. 0.5 $250,000 Yes
b. Assist BPA with NEPA development. 0.5 $80,000
3. Complete Step 2 - Preliminary Design a. Select a design firm for preliminary design and award subcontract based on conceptual design and master plan. 0.5 $150,000 Yes
b. Acquire all permits necessary for construction so that final design process can be accomplished quickly. 0.5 $25,000
c. Respond to ISRP comments. 0.2 $5,000
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Step 2 review with NPPC 2003 2003 $80,000
2. Conduct Step 3 Process of Final Design 2003 2003 $250,000
3. Seek Step 3 Review with NPPC 2003 2003 $20,000
4. Contractor Selection Process 2004 2004 $30,000
5. Construction oversight 2004 2004 $80,000
Outyear budgets for Planning and Design phase
FY 2003FY 2004
$350,000$110,000

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
See Project #198335005 (sponser is BPA-anticipate no cost in FY02) $0
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Construction of new and modification of existing NPTH facilities 2004 2004 $2,000,000
2. Construct office building at CIRF, Allotment 1705 to accommodate NPTH O&M plus new M&E staff. More than 40 full-time/seasonal personnel will be required to operate production of spring/fall chinook and coho, over 2.0 million fish production. 2005 2005 $1,000,000
Outyear budgets for Construction and Implementation phase
FY 2004FY 2005
$2,000,000$1,000,000

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Administration, Coordination and Communication a. Provide quarterly and annual reports to BPA stating accomplished goals and objectives. ongoing $5,000
b. Participate in U.S. v. Oregon Production Advisory Committee (PAC) meetings and PAC annual production report. ongoing $8,000
c. Develop ESA Biological Assessments and respond to Biological Opinion terms and conditions regarding hatchery production releases that interact with ESA listed fishes. ongoing $2,000
d. Report project activities and findings at BPA/CBFWA quarterly/annual reviews and as the NPPC requests. ongoing $2,000
e. Coordinate with NPT Research Division on M&E activities for NPTH and other supplementation projects. ongoing $9,000
f. Monitor, review, and comment on USFS and other land management agency actions in watersheds where NPTH supplementation occurrs and act to protect watersheds crucial to project. ongoing $2,000
g. Assist with conservation resource and facility protection through Tribal enforcement division. ongoing $1,000
h. Submit final HGMP to NMFS 0.5 $3,000
i. Renew/Modify USFS special use permits for satellite sites as required. ongoing $1,000
j. Develop Annual Operations Plan (AOP) in accordance with MOA between BPA and NPT for NPTH. ongoing $6,000
k. Develop proposals, work statements and budgets for operation of facilities. ongoing $4,000
l. Provide information for provincial scientific review of project. ongoing $2,000
. $0
2. O& M - Central Incubation and Rearing Facility & Equipment Acquisition a. Begin facility management, complete testing and conduct operations as described in the CIRF facility operations manual including maintenance. ongoing $848,000
b. Purchase equipment to support hatchery & acclimation facility operations including Cedar Flats and Lukes Gulch. 2 $718,000
c. Coordinate fish transport, fish health inspections, and releases with co-managers. ongoing $2,000
d. Update facility operations and routine maintenance journals. ongoing $2,000
3. O&M - Spring Chinook salmon at CIRF a. Incubate approximately 1.03m spring chinook eggs. ongoing $20,000
b. Rear 400,000 spring chinook to 107/lb, in NATURE's "S" Channel, transport via truck and helicoptor to Meadow Creek/Selway for direct release between 6/15 and 7/10. ongoing $63,000
c. Rear 160,000 spring chinook to 100/lb, transport to Yoosa/Camp satellite facility 5/15 for rearing. ongoing $40,000
d. Rear 80,000 spring chinook to 100/lb, transport to Newsome Creek satellite May 15 for rearing. ongoing $30,000
4. O&M - Fall Chinook salmon at CIRF a. Incubate approximately 2.3m fall chinook eggs beginning in November. ongoing $30,000
b. Rear 536,000 fall chinook to 200/lb and transport to North Lapwai Valley satellite February 1. ongoing $50,000
c. Rear 213,000 fall chinook to 200/lb transport to Sweetwater Springs on February 1 for later transfer to Cedar Flats on April 16. ongoing $23,000
d. Rear 213,000 fall chinook to 200/lb and transport to Lukes Gulch facility on February 25 for rearing. ongoing $30,000
e. In late September thru early November trap 2,000 fall chinook adults at NPTH sites, Lower Granite Dam and/or Lyons Ferry Hatchery and spawn broodstock to begin incubation. ongoing $20,000
5. O&M - Sweetwater Springs Facility a. Receive 213,000 fall chinook at 200/lb February 25th and rear to 106/lb for acclimation at Cedar Flats beginning April 16th. ongoing $147,000
b. April 16th transport 207,000 fall chinook at 107/lb to Cedar Flats facility ongoing $2,000
c. July 1st provide for alternative adult spring chinook broodstock holding in the event water temperatures at Newsome Creek or Yoosa/Camp satellites rise above safe holding conditions. ongoing $5,000
6. O&M - Fall chinook at North Lapwai Valley facility. a. Receive 536,000 fall chinook at 314/lb on February 1st. ongoing $0
b. Rear fall chinook until they reach 50/lb or greater and volitionally release 500,000 as Age-0 smolts on May 31st at 50/lb. ongoing $153,000
7. O&M - Fall chinook at Cedar Flats facility. a. Assemble 10 - 20 ft circular tanks, living quarters, hoses, headtank, and water supply system by April 11th. ongoing $20,000
b. Receive 207,000 fall chinook from Sweetwater Springs facility at 107/lb on April 16th . ongoing $0
c. Rear fall chinook until they reach 50/lb and volitionally release on June 15th. ongoing $118,000
d.Disassemble circular tanks, hoses, headtank, and water supply system and store. ongoing $15,000
8. O&M - Fall chinook at Lukes Gulch facility. a. Assemble 10 - 20 ft circular tanks, living quarters, hoses, headtank, and water supply system by April 11th. ongoing $20,000
b. Receive 213,000 fall chinook from CIRF at 200/lb on February 25th . ongoing $0
c. Rear fall chinook until they reach 50/lb and release on June 15th . ongoing $123,000
d. Disassemble hoses, headtank, and water supply system and store. ongoing $10,000
9. O&M - Spring chinook at Newsome Creek facility. a. Receive 80,000 spring chinook from CIRF at 174/lb on May 16th . ongoing $0
b. Rear spring chinook in NATURE's pond for 5+ months to 29/lb and begin volitional release between October 1st to 15th. ongoing $153,000
10. O&M - Spring chinook at Yoosa/Camp Creek facility. a. Receive 160,000 spring chinook from CIRF at 174/lb on May 16th. ongoing $0
b. Rear spring chinook in two NATUREs ponds for 5+ months to 29/lb and begin volitional releases between October 1st to 15th . ongoing $153,000
11. M&E - Spring chinook - NATURES vs. Conventional Rearing - 3 locations a. Assemble small conventional rearing units at 1705, Yoosa/Camp, and Newsome Creek. 5 $1,000
b. Conduct final rearing on test groups as defined in NPTH M&E Plan . 5 $3,000
c. Provide necessary support to collect data for M&E. 5 $1,000
12. Transfer of Technology (see Objective 1 for FY02 costs) a. Prepare and provide quarterly reports to BPA stating accomplished goals and objectives. ongoing $0
b. Compile, analyze, and present results in coordination with the M&E project in an annual report. ongoing $0
c. Report project activities and findings at BPA/CBFWA quarterly/annual reviews and as the NPPC requests. ongoing $0
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1 to 12. Same as Objectives & Tasks in FY2002 marked ongoing. 2003 2006 $7,900,000
13. Begin rearing of coho in NPTH facilities and acclimation facility(s). 2004 2006 $1,050,000
Outyear budgets for Operations and Maintenance phase
FY 2003FY 2004FY 2005FY 2006
$1,975,000$2,325,000$2,394,000$2,466,000

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
See project #198335003 $0
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Monitoring and Evaluation phase

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 22 $748,000
Fringe 30% $224,000
Supplies $956,000
Travel $30,000
Indirect 20.9% $409,000
Capital $718,000
NEPA through BPA $250,000
Subcontractor Preliminary Design $150,000
$3,485,000
Total estimated budget
Total FY 2002 cost$3,485,000
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$3,485,000
FY 2002 forecast from 2001$3,385,000
% change from forecast3.0%
Reason for change in estimated budget

Cost of O&M has decreased by $190,000 whereas cost for P&D has increased by $290,000. P&D activities will include a more thorough preliminary design for $150,000 than was forecast ($50,000) to shorten the length of time necessary for final design. In addition BPA estimates NEPA costs at $250,000 vs. our estimate of $100,000. O&M budget forecast from FY01 was $3,035,000 and P&D was $350,000. We are requesting FY02 costs of $2,845,000 for O&M and $640,000 for P&D.

Cost sharing
OrganizationItem or service providedAmountCash or in-kind

Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Sep 28, 2001

Comment:

A response is needed. The ISRP remains concerned about and skeptical of this project. Reviewers did not feel that the ISRP's previous questions were adequately addressed in the proposal, specifically, (1)"This project focuses on a largely untested concept on too large a scale", and (2)"the conditions primarily responsible for limiting the resource (the salmon population in this case) be identified, and (3) that it be demonstrated that the proposed project will remove those limiting conditions or circumvent them".

The NPTH has two phases of construction management. These phases are the result of issues arising during the Final Design process. During that process, the NPPC approved construction of a smaller scale, more temporary NPTH program, based on concerns by the ISRP in their FY2000 review. Implementation of the full-scale production program (Phase Two) will be dependent on M&E results from the first phase of the program. Initial production numbers were decreased and facility infrastructure was designed to meet a reduced cost. It is important that the NPTH production remain at the reduced Phase I level throughout this initial review and evaluation period.

The ISRP remains concerned that planning for the hatchery and its M&E include all possible management and response alternatives including termination of the program due to either success or failure in achieving program objectives. A noted in FY00 review, the ISRP recommends that a full and consistent decision tree be developed as the program moves forward. The tree should specify all triggers, including intermediate levels and timelines that if not achieved would forestall Phase 2 construction, or even lead to termination of the program itself. The history of fisheries management in the Columbia River Basin is replete with projects that failed to achieve their objectives in part or even completely. Thus, in spite of the need for this project, and the enthusiasm of its implementers, it would seem prudent to plan for all possible outcomes.

Another lingering concern is that the project focuses on a largely untested concept on too large a scale. We note that Phase I production objectives have been scaled down in response to this concern from the ISRP. Over the last decade, the Basin has entered into 3 substantial programs that were intended to serve as experimental tests of supplementation (NEOH, Idaho, and Yakima projects); but have not yet had time to yield reliable findings. The scientific foundation for the NPT large-scale project has therefore, not been provided. The proposed activities should more directly address or at least circumvent limiting factors to salmon production.

Many of the asserted "innovative" approaches (i.e., NATUREs concept) are presently supported by a small literature base that is limited in both the scale of studies and by the subsequent inferences to overall hatchery practices. In general, the approaches have not been proven to yield greater survival to adulthood of released fish than standard practice. Project advocates also claim that they will not impact populations in nature by keeping within natural "carrying capacities." Carrying capacity has proven difficult to measure and altering density at any population level with propagated fish will no doubt influence the population in nature. On the positive side, it appears the sponsors have undertaken surveys to determine carrying capacity and appear to be undertaking habitat improvement projects to absorb the hatchery-produced fish.


Recommendation:
High Priority
Date:
Nov 30, 2001

Comment:


Recommendation:
Fund
Date:
Dec 21, 2001

Comment:

Fundable at the Phase 1 level only. Future funding likely to be contingent upon proposals better addressing longstanding ISRP concerns from previous reviews.

The proposal and response did not sufficiently address longstanding ISRP concerns. The applicant relies on "policy decision" rather than on scientific justification for the project. Specifically, the ISRP's previous questions were, (1)"This project focuses on a largely untested concept on too large a scale", (2)"the conditions primarily responsible for limiting the resource (the salmon population in this case) be identified, and (3) that it be demonstrated that the proposed project will remove those limiting conditions or circumvent them."

The NPTH has two phases of construction management. These phases are the result of issues arising during the Final Design process. During that process, the NPPC approved construction of a smaller scale, more temporary NPTH program, based on concerns by the ISRP in their FY2000 review. Implementation of the full-scale production program (Phase Two) will be dependent on M&E results from the first phase of the program. Initial production numbers were decreased and facility infrastructure was designed to meet a reduced cost. It is important that the NPTH production remain at the reduced Phase I level throughout this initial review and evaluation period.

The ISRP remains concerned that planning for the hatchery and its M&E include all possible management and response alternatives including termination of the program due to either success or failure in achieving program objectives. A noted in FY00 review, the ISRP recommends that a full and consistent decision tree be developed as the program moves forward. The tree should specify all triggers, including intermediate levels and timelines that if not achieved would forestall Phase 2 construction, or even lead to termination of the program itself. The history of fisheries management in the Columbia River Basin is replete with projects that failed to achieve their objectives in part or even completely. Thus, in spite of the need for this project, and the enthusiasm of its implementers, it would seem prudent to plan for all possible outcomes.

Another lingering concern is that the project focuses on a largely untested concept on too large a scale. We note that Phase I production objectives have been scaled down in response to this concern from the ISRP. Over the last decade, the Basin has entered into 3 substantial programs that were intended to serve as experimental tests of supplementation (NEOH, Idaho, and Yakima projects); but have not yet had time to yield reliable findings. The scientific foundation for the NPT large-scale project has therefore, not been provided. The proposed activities should more directly address or at least circumvent factors that limit salmon production.

Many of the asserted "innovative" approaches (i.e., the NATUREs concept) are presently supported by a small literature base that is limited in the scale of studies and by the subsequent inferences to overall hatchery practices. In general, the approaches have not been proven to yield greater survival to adulthood of released fish than standard practice. Project advocates also claim that, by keeping within natural "carrying capacities," they will avoid negatively impacting populations in nature. Carrying capacity has proven difficult to measure, and altering density at any population level with propagated fish will no doubt influence the population in nature. On the positive side, it appears the sponsors have undertaken surveys to determine carrying capacity and appear to be undertaking habitat improvement projects to absorb the hatchery-produced fish.


Recommendation:
Date:
Feb 1, 2002

Comment:

Statement of Potential Biological Benefit to ESU
Intended to assist recovery of SR FCH and reintroduction of SR SSCH in Clearwater System

Comments
Agree with the ISRP comments on this and the following proposal. The commitment to NATURES rearing without any other large scale tests has contributed to the expense of this project, particularly for a fairly small production of Rapid River stock of spring chinook that are proposed for release as Natures-reared parr into some questionable habitats. Phase 1 may be a good boost to the Clearwater fall chinook, but phase 2 should be held until evaluation is complete on phase 1. The size and scope of the production programs and the potential adult returns may not justify the cost of this program.

Already ESA Req? No

Biop? No


Recommendation:
A
Date:
Feb 11, 2002

Comment:

Recommend funding Phase I production Level (goal of approximately 2 million sub-yearlings and pre-smolts) only.

BPA RPA RPM:
--

NMFS RPA/USFWS RPM:
--


Recommendation:
Fund
Date:
Apr 19, 2002

Comment:

Council recommendation: The Nez Perce Tribal Fish Hatchery (NPTH) has been in the Council's program since 1982. The NPTH was originally conceived to produce juvenile spring chinook and juvenile fall chinook for supplementation of existing populations in the Clearwater River Subbasin. The facilities associated with this project includes a central incubation/rearing/acclimation facility at Allotment 1705, a rearing and adult holding facility at Sweetwater Springs, five satellite acclimation facilities in the Clearwater River Subbasin (Cedar Flats, Luke's Gulch, Newsome Creek, Yoosa/Camp Creek, and North Lapwai Valley).

At the May 17, 2000, meeting in Helena, the Council approved the step-three (Final Design) review for the Nez Perce Tribal Hatchery. While it approved the final designs and recommended that Bonneville fund the construction of the facilities associated with this project, it conditioned the approval based on the following.

To meet the $16 million construction cap, modifications to the design of the facilities were made to several of the sites. This included the following.

The Council was very specific during its deliberation and approval of the step three review of the NPTH. In addition, it qualified any future expansion of the facilities or production to future reviews and approvals. Therefore, the proposed budgets and phases for this project for Fiscal Years 2002 through 2004 were aligned to the Council decision as reviewed and confirmed by the Council on November 1, 2000. The Council's recommended alignment is consistent with the ISRP recommendation to fund only Phase 1 activities at this time. The NMFS and Bonneville comments agree with the ISRP recommendations for these two projects, and support only the production levels that were approved by the Council as part of the step three review.


Recommendation:
Fund
Date:
Jun 13, 2002

Comment:

Fund Phase I Production Level (goal of approximately 2 million sub-yearlings and pre-smolts).
Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

O&M, portable equipment to be acquired - could be capitalized. $124K in 2003 (within year reallocation). 2005 estimate - higher than original projection. Check for STEP review. M&E needs to reflect savings from trailer purchase
Recommendation:
Date:
Sep 20, 2003

Comment:

Year-2001 projected budgets stated FY'05 as $1,974,000; however, the rule applied here is to increase the FY'04 budget by 3.4% to project the FY'05 amount. In addition, we are finding that O&M costs and personnel requirements could not be met if we decreased the FY'05 budget. Having the FY'05 budget at $2,096952 is more in line with the anticipated 10 year projections based on inflation.
REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$1,974,000 $1,974,000 $1,974,000

Sponsor comments: See comment at Council's website