FY 2002 Mountain Snake proposal 199607702

Section 1. Administrative

Proposal titleProtect and Restore Lolo Creek Watershed
Proposal ID199607702
OrganizationNez Perce Tribe Fisheries Watershed Program (NPT)
Proposal contact person or principal investigator
NameHeidi Mcroberts
Mailing addressP.O. Box 365 Lapwai, ID 83540
Phone / email2088437144 / heidim@nezperce.org
Manager authorizing this projectIra Jones
Review cycleMountain Snake
Province / SubbasinMountain Snake / Clearwater
Short descriptionProtect, restore, and enhance the Lolo Creek Watershed to provide quality habitat for anadromous and resident fish. This will be accomplished by watershed resotration projects such as culvert replacement, road obliteration, and streambank stabilization.
Target speciesChinook salmon, steelhead trout, bull trout, lamprey
Project location
LatitudeLongitudeDescription
46.27 -115.78 Lolo Creek, tributary to the mainstem Clearwater River; Clearwater County, Idaho
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA
Habitat RPA Action 149
Habitat RPA Action 150
Habitat RPA Action 153
RM&E RPA Action 183

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS Action 153 NMFS BPA shall, working with agricultural incentive programs such as the Conservation Reserve Enhancement Program, negotiate and fund long-term protection for 100 miles of riparian buffers per year in accordance with criteria BPA and NMFS will develop by June 1, 2001.

Section 2. Past accomplishments

YearAccomplishment
1997 Construct 3.6 miles of fence for riparian habitat, cultural resource, and spawning habitat protection
1997 Completed 12 miles of road obliteration to reduce sediment delivery to streams
1998 Construction on 10 miles of riparian protection/cattle exclusion fence
1998 Installation of one off-site watering development to keep cattle in the uplands and out of riparian areas
1998 Completed 15 miles of road obliteration to reduce sediment delivery to streams
1999 Installation of an additional off-site watering development to keep cattle in the uplands and out of ripairn areas
1999 Completed 29 miles of road obliteration to reduce sediment delivery to streams
1999 Constructed 2 miles of riparian protection/cattle exclusion fence
2000 Completed maintenance on all previously built fence
2000 Completed bank stabilization project (100-feet) on Jim Brown Creek
2000 Culvert inventories were started in Lolo Creek watershed by Clearwater National Forest

Section 3. Relationships to other projects

Project IDTitleDescription
9700601 Clearwater River Subbasin Watershed Assessment Watershed assessment at the subbasin scale (Clearwater River)
9706000 Clearwater River Subbasin Focus Watershed Program (NPT) Cooperative project to coordinate watershed activities within the Clearwater River Subbasin
9608600 Clearwater River Subbasin Focus Watershed Program (ISCC) Cooperative project to coordinate watershed activities within the Clearwater River Subbasin
9607705 Meadow Creek Watershed Restoration Watershed restoration: fencing, riparian re-vegetation, proposed road obliteration, culvert replacement, channel restoration
9607703 Waw'aatamnima (Fishing)(Squaw) Creek to 'Imnaamatnoon (Legendary Bear)(Papoose) Creek Watersheds Analysis Area Watershed restoration: road obliteration and culvert replacements
2000340 North Lochsa Face Analysis Area Watershed restoration: road decomissioning
2008600 Newsome Creek Watershed Restoration Watershed restoration: road decommissioning, channel restoration
2000360 Mill Creek Watershed Restoration Watershed restoration: fencing/ cattle exclusion, riparian re-vegetation, culvert repair/replacement
9303501 Red River Watershed Restoration Watershed restoration: channel relocation and riparian restoration
8335003 Nez Perce Tribal Hatchery Monitoring and Evaluation Evaluation of effectiveness of supplementation: snorkeling and redd counts
8335000 Nez Perce Tribal Hatchery Hatchery supplementation to restore and recover Snake River Basin salmon stocks

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Coordinate with agencies on pre-work, planning and logistics. a. Coordinate with CNF on pre-work, planning, and logistics through a Challenge Cost Share Agreement. on-going $4,745
1. b. Consult with the CNF, USFWS, and NMFS on any NEPA, ESA consultation or permits needed. on-going $22,211 Yes
1. c. Consult with SHPO and NPT on any cultural/historic sites. on-going $5,745 Yes
1. d. Conduct pre-work surveys for TES plants and weeds. on-going $8,141 Yes
1. e. Develop protection, avoidance, or abatement plans for TES plants, weeds, and heritage resources. on-going $5,512 Yes
2. Characterize and analyze the current condition of the Lolo Creek watershed in order to guide restoration projects. a. Coordinate with the Clearwater National Forest to complete the Ecosystem Analysis at the Watershed Scale (EAWS). 1 $102,308 Yes
2. b.Oversee data collection and composition of the EAWS. Collaborative effort with CNF. 1 $15,545
3. Restore and enhance critical riparian and in-stream habitat to reduce sedimentation and stream temperatures. a. Coordinate with Coordinated Resource Management (CRM) group and private landowners to protect critical habitat. on-going $7,024
3. b. Inventory in-stream structures to identify potential barriers, sediment problems, or degrading habitat structures. on-going $8,925
3. c.Survey and design structures in need of repair/removal. on-going $13,233 Yes
4. Restore hydrologic connectivity and fish passage within the Lolo Creek watershed. a. Inventory culverts within the sub-watershed (Jim Brown Creek) for hydrologic or fish passage problems. 1 $19,507
4. b. Survey and design project area for natural stream simulation and the passage of all aquatic species within Lolo and Jim Brown Creek watershed. on-going $13,233
5. Alleviate sediment input to the stream and reduce risk from sediment related mass wasting and surface erosion related to road sources. a. Identify roads that are candidates for obliteration (also referred to as decommissioning). Collaborative effort with the CNF. on-going $7,024
b. Survey road system to determine level of treatment (obliteration/ decommisionning) for alleviating sediment input and reducing the risk of mass wasting. on-going $19,634
6. Dissemination of project information and peer review a. Complete quarterly and end of year reports as they become due on-going $12,247
6. b. Perform necessary presnetations to the public and project peers. on-going $4,745
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Coordinate with agencies on pre-work, planning and logistics. 2003 2006 $209,783
2. Restore and enhance critical riparian and in-stream habitat as it creates fish and wildlife habitat. 2003 2006 $107,658
3. Restore hydrologic connectivity and fish passage within the Lolo Creek watershed.. 2003 2006 $63,584
4. Alleviate sediment input to the stream and reduce risk from sediment related mass wasting and surface erosion related to road sources. 2003 2006 $31,789
5. Dissemination of project information and peer review. 2003 2006 $76,902
Outyear budgets for Planning and Design phase
FY 2003FY 2004FY 2005FY 2006
$135,015$112,514$118,140$124,047

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Restore and enhance critical riparian and in-stream habitat to reduce sedimentation and stream temperatures. a. Gather/obtain trees to be planted within critical riparian areas. on-going $10,249
1. b. Plant riparian vegetation to enhance stream shading. on-going $7,339
1. c. Stabilize banks using bioengineering techniques $9,152
2. Restore hydrologic connectivity and fish passage within the Lolo Creek watershed. b. Replace three culverts to make available critical habitat and/or to eliminate potential on-going $131,745 Yes
3. Alleviate sediment input to the stream and reduce risk from sediment related mass wasting and surface erosion related to road sources. a. Map locations of road s using GPS units. Coordinated with the CNF. on-going $15,372
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Restore and enhance critical riparian and in-stream habitat to reduce sedimentation and stream temperatures. 2003 2006 $204,710
2. Restore hydrologic connectivity and fish passage within the Lolo Creek watershed. 2003 2006 $1,135,679
3. Alleviate sediment input to the stream and reduce risk from sediment related mass wasting and surface erosion related to road sources. 2003 2006 $830,585
Outyear budgets for Construction and Implementation phase
FY 2003FY 2004FY 2005FY 2006
$517,381$533,737$550,911$568,944

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Restore and enhance critical riparian and in-stream habitat to reduce sedimentation and stream temperatures. a. Maintain all previously constructed riparian protection fence. on-going $14,701
b. Maintain off-site water developments. on-going $4,334
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Restore and enhance critical riparian and in-stream habitat to reduce sedimentation and stream temperatures. 2003 2006 $82,046
Outyear budgets for Operations and Maintenance phase
FY 2003FY 2004FY 2005FY 2006
$19,036$19,987$20,987$22,036

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Monitor and evaluate success of implementation projects (i.e. re-vegetation, streambank stabilization, culvert replacements). a. Implement Lolo Creek Restoration Effectiveness Monitoring Plan to determine trend in habitat conditions as a result of restoration projects. on-going $19,664
1. b. Implement Road Obliteration Effectiveness Monitoring Plan. on-going $12,791
1. c. Compile and analyze data, making recommendations for improvements on the monitoring plans and restoration practices. on-going $7,066
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Monitor and evaluate success of implementation projects (i.e. re-vegetation, road obliteration, culvert replacements). 2003 2006 $178,836
Outyear budgets for Monitoring and Evaluation phase
FY 2003FY 2004FY 2005FY 2006
$41,492$43,567$45,745$48,032

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 3 $123,900
Fringe permanent, taxed 30% permanent, tax exempt 20% temporary, taxed 15% temp, tax exempt 5% $32,348
Supplies GPS Unit, 4-wheeler, survey equipment, vegetation, $25,100
Travel $38,000
Indirect 20.9% $45,844
NEPA $10,000
Subcontractor Heavy Equipment, Archaeological Surveys, EAWS $227,000
$502,192
Total estimated budget
Total FY 2002 cost$502,192
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$502,192
FY 2002 forecast from 2001$404,000
% change from forecast24.3%
Reason for change in estimated budget

A watershed assessment has not been completed for the Lolo Creek watershed. This project proposes to complete a watershed assessment (Ecosystem Analysis at the Watershed Scale) in FY 2002.

Cost sharing
OrganizationItem or service providedAmountCash or in-kind
Clearwater National Forest Design & field preparation, contract preparation, NEPA, EAWS $262,000 in-kind
Potlatch Corporation Inc. Project coordination $10,000 in-kind
Other budget explanation

Implementation costs for out years include completing 25 miles of road decommissioning per year. Culvert repair/replacement will double in the number implemented in out-years because inventories will be completed.


Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Sep 28, 2001

Comment:

Response needed. This project has run since 1996, but the watershed assessment is not yet complete. Passage is a limiting factor due to culverts. Needs have been prioritized. Biological results are in NPTH M and E.

In general a very thorough, informative proposal. The long-needed watershed analysis is scheduled to be completed in September 2001. If this is not done, all other project work should be halted until it is, so management can be designed according to WA findings.

The proposal states that bioengineering is the project's approach for stabilizing stream banks. However, Figures 2 and 3 show hard structure (rock rip-rap and a rock current deflector), in other words, the opposite of bioengineering. Rock rip-rap is primarily counterproductive for fish habitat. It usually provides little habitat compared with live vegetation and wood debris, and it prevents natural channel migration. Natural stream channels migrate at a moderate rate, in the process providing fish habitat by such actions as carving bank undercuts, toppling trees into the channel, and recruiting gravel to the bed. The illustrations indicate that the sponsor is constructing so as to lock the channel in an unchanging course.

How many stream miles have been directly benefited by the project since 1996, will be in FY 2002, and are anticipated to be during the projected rest of the project life?

Of what does the consultation in Tasks 1b consist? "Consult" seems a vague term, and the cost of $22,200 seems high.

The reviewers are given to understand that the project's biological results will be evaluated under the NPTH M&E project. The project history states only activities performed, not biological results achieved. The proposal should contain results in terms of fish.

Tasks 3E and 3F involve survey of in-stream structures that were installed in the 1970s-80s to identify and remedy problems. The wording indicates that problem assessment will be on an engineering basis. Biologists should be involved to determine in each case whether there is really any problem for fish—and to make sure that engineering remedies will not cause ecological problems.

Although this proposal describes some M and E linkages ("tiers"), this proposal and the set of NPT habitat proposals need to demonstrate closer ties to the NPT and other fish monitoring projects in the watershed and province (e.g. NPT projects 1988335003, 199703000, IDFG project 199107300, and the ISS studies). In the long term, fish-monitoring data will be critical in determining the efficacy of the restoration activities. The response needs to describe clear coordination between this proposal, proposal 28045, and the NPT fisheries and other entities' monitoring programs; and demonstrate how data and analysis will be shared between the projects. In addition, see the ISRP's comments on 28045 and programmatic comments on M&E at the beginning of this report. The NPT may want to submit one coordinated response for its numerous habitat projects.

The review group also suggests that future terrestrial monitoring efforts be made compatible with one of the national terrestrial survey efforts. Perhaps an intensification of the National Resources Inventory survey sites and data collection protocols would serve the region well. See the Proposals #200002300 and #200020116 and ISRP reviews in the Columbia Plateau.


Recommendation:
High Priority
Date:
Nov 30, 2001

Comment:

Project addresses RPA 500. It is not clear what information is guiding work in this watershed. Completion of a watershed assessment should be prioritized.
Recommendation:
Fund
Date:
Dec 21, 2001

Comment:

Fundable. According to the sponsor's response, general watershed analysis was completed in September 2001, and refined EAWS (Ecosystem Analysis at the Watershed Scale) is proceeding. The EAWS must allow identification of critical salmonid life stage usage in the watershed and geographic portions of the basin that warrant restoration and protection activity. Factors limiting salmonid life stages should be identified. Further work should not continue until the EAWS is complete and there is clear indication of how this project will be monitored.

The response seems to indicate that the M&E procedures will be upgraded, in that they will be done by or coordinated with the appropriate monitoring projects, such as 28045 and 198335003. The reviewers caution that it is essential to have the advice of a biometrician and experimental analyst. Monitoring and evaluation by means of modeling approaches, as suggested, can be instructive, but a control and treatment comparison of flow regimes, temperature, sedimentation and the fish response must be included. Problems of probably confounding with results of supplementation are evident in the projects M&E. Likewise, an analysis of risk and uncertainty would aid reviews and planning (i.e., indicate the amount of work required before a positive impact is measurable, and the likelihood of failure).

To assist in establishing a sound basinwide monitoring program, the proponents are referred to the programmatic section of this report on Monitoring, the specific comments on Aquatic Monitoring and Evaluation, and the specific comments on Terrestrial Monitoring and Evaluation.


Recommendation:
Date:
Feb 1, 2002

Comment:

Statement of Potential Biological Benefit to ESU
Likely increase in survival as a result of improvement of habitat through road obliteration, culvert replacement and other restoration activities.

Comments
This project is not in a priority subbasin and therefore is not geographically consistent with Action 149. This project has been ongoing since 1996. Lolo Creek is not a large watershed. Is it possible to determine how many culverts have been replaced and how many are left? It seems to be time to reevaluate this project.

Already ESA Req? No

Biop? Yes


Recommendation:
B
Date:
Feb 11, 2002

Comment:

Recommend not funding at this time. This project should wait until it is reviewed under BPA's policy for funding habitat projects on federal lands.

BPA RPA RPM:
--

NMFS RPA/USFWS RPM:
500


Recommendation:
Fund
Date:
Apr 19, 2002

Comment:

Council recommendation: The Bonneville comments on each of these ongoing Nez Perce tribe habitat projects [199607702; 199607703; 19960705; 200003400; 200003500; 200003600] did not support funding until they are reviewed in light of Bonneville's draft proposed interim policy for funding projects on federally owned land. If this review is not done right away, given that each of these projects are ongoing projects, the Bonneville comment could amount to a defunding recommendation. Defunding these ongoing projects that were rated as "fundable" by the ISRP and which also remain a priority of the local fish and wildlife managers and interested parties is contrary to two of the general Council approved funding principles (protect the past investment of ongoing projects that have ISRP support; support projects that are supported and coordinated locally). These projects are also responding to the ESA needs outlined in the Action Agency 2002 Implementation Plan, and are a priority under the Council general funding considerations. The Council does not believe that the Bonneville comments should be understood as defunding recommendations. Rather, given the timing of its release, and the lack of notice to project sponsors of the substance of this draft proposed interim policy, the Council believes that these projects should be supported by Bonneville if they demonstrate responsiveness to its primary principles.

For the reasons discussed in the programmatic policy issue regarding draft Bonneville policy, the Council will not accept and use Bonneville's draft policy in a dispositive manner, as written, in making its recommendations on these projects. However, the Council does believe that it is enlightening to do a project-by-project review of the projects on two points: (1) cost-sharing; and (2) connections or relatedness of the habitat work to other Bonneville investments. The Council believes that this would be informative because notwithstanding the rather cumbersome and complex multiple sets of criteria in the proposed Bonneville policy, the issues of cost-share and relationship to other Bonneville investments seem to be the key points. The Council believes that evaluating these projects relative to those two main points is responsive to Bonneville's comments and, depending on the results, should be sufficient to allow these projects to proceed as the Council, Bonneville, and public further discuss the draft interim policy.

  1. 199607702 - Protect and Restore Lolo Creek Watershed: The project is on 50% private and 50% federal land. The sponsor reports a proposed federal cost-share for FY 02 of $370,000 matched with an FY 02 request of $221,013 in Bonneville funds. This amounts to an approximate non-Bonneville cost-share of 62%.
  2. The sponsor has presented detailed information that shows significant past Bonneville investment in the project area, including habitat work, research, and Nez Perce Tribal Hatchery components. The watershed has also received out-plantings from the Lower Snake River Compensation Program (BPA funded). The Action Agency 2002 Implementation Plan identifies this project as one of the habitat projects that will be implemented in Fiscal Year 2002 to address habitat elements of the off-site mitigation component of the Biological Opinion.

  3. 199607703 - Protect and Restore Waw'aatamnima Creek to 'Imnaamatoon Creek Watersheds Analysis Area: The sponsor reports a proposed federal cost-share for FY 02 of $365,000 matched with an FY02 request of $413,000 in Bonneville funds. This amounts to an approximate non-Bonneville cost-share of 47%.
  4. The sponsor has provided detailed information that demonstrates that Bonneville has invested over $15 million in the project area for actions that include habitat restoration, passage work, research, and artificial production that this proposed work builds upon. The Action Agency 2002 Implementation Plan identifies this project as one of the habitat projects that will be implemented in Fiscal Year 2002 to address habitat elements of the off-site mitigation component of the Biological Opinion.

  5. 199607705 - Restore McComas Meadows: The sponsor reports a proposed federal cost-share for FY 02 of $722,000 matched with an FY02 request of $332,000 in Bonneville funds. This amounts to an approximate non-Bonneville cost-share of 70%.
  6. The sponsor has provided detailed information showing that the proposed work builds upon substantial past Bonneville investments including habitat restoration, research, and artificial production actions. The stream is used for varied supplementation initiatives of the Nez Perce tribe, such as out-planting Lower Snake River Compensation Program fish (BPA-funded). The Action Agency 2002 Implementation Plan identifies this project as one of the habitat projects that will be implemented in Fiscal Year 2002 to address habitat elements of the off-site mitigation component of the Biological Opinion.

  7. 200003400 - Protect and Restore North Lochsa Face Analysis Area Watersheds: The sponsor reports a proposed federal cost-share for FY 02 of $219,000 matched with an FY02 request of $182,507 in Bonneville funds. This amounts to an approximate non-Bonneville cost-share of 55%.
  8. The sponsor has provided detailed information showing how the proposed work builds upon substantial past Bonneville investments in the project area for habitat work, passage, and research. The Action Agency 2002 Implementation Plan identifies this project as one of the habitat projects that will be implemented in Fiscal Year 2002 to address habitat elements of the off-site mitigation component of the Biological Opinion.

  9. 200003500 - Rehabilitate Newsome Creek Watershed (S.F. Clearwater R.): The sponsor reports a proposed federal cost-share for FY 02 of $ 136,000 matched with an FY02 request of $287,732 in Bonneville funds. This amounts to an approximate non-Bonneville cost-share of 32%.
  10. The sponsor has provided detailed information showing how the proposed work builds on past Bonneville investments in the project area for habitat restoration, research, and out-planting for Bonneville funded Lower Snake River Compensation Program (BPA funded) fish. The Action Agency 2002 Implementation Plan identifies this project as one of the habitat projects that will be implemented in Fiscal Year 2002 to address habitat elements of the off-site mitigation component of the Biological Opinion.

  11. 200003600 - Protect and Restore Mill Creek: The sponsor reports a proposed federal cost-share for FY 02 of $ 45,000 matched with an FY02 request of $ 74,915 in Bonneville funds. This amounts to an approximate non-Bonneville cost-share of 38 %.
  12. The sponsor has provided detailed information showing how the propose work relates to and builds upon past Bonneville investments. Bonneville has funded habitat restoration and monitoring work, and the watershed is involved in Nez Perce Tribe and Lower Snake River Compensation Program production initiatives (both BPA funded). The Action Agency 2002 Implementation Plan identifies this project as one of the habitat projects that will be implemented in Fiscal Year 2002 to address habitat elements of the off-site mitigation component of the Biological Opinion.

Four of the projects budgets are held to the general rule of a 3.4% increase to the Council's Fiscal Year 2001 recommended budgets. Project 199607705 is recommended to receive a substantial increase. The watershed scale assessment has been completed for this project, and the additional funding is recommended to move to the next logical and planned step, which is to implement the restoration strategies in light of the assessment. Project 200003500 has a substantial budget decrease from the Fiscal Year 2001 approved amount, and the Council recommends that lower amount. See Table 1 for all of the budget impact specifics. The Council recommends that the sponsor and Bonneville document, as a condition of contracting, how the sponsors will monitor and report on the effectiveness of these activities.
Recommendation:
Fund
Date:
Jul 11, 2002

Comment:

Fund
Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

On track. Increases due to COLA - Still waiting on contract for 03.
Recommendation:
Date:
Sep 20, 2003

Comment:


REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$252,638 $252,638 $252,638

Sponsor comments: See comment at Council's website