FY 2000 proposal 199009300

Additional documents

TitleType
199009300 Narrative Narrative

Section 1. Administrative

Proposal titleGenetic Analysis of Oncorhynchus Nerka (Modified to Include Chinook Salmon)
Proposal ID199009300
OrganizationUniversity of Idaho (UI)
Proposal contact person or principal investigator
NameMadison S. Powell
Mailing address3059F National Fish Hatchery Road Hagerman, ID 83332
Phone / email2088379096 / fishdna@micron.net
Manager authorizing this project
Review cycleFY 2000
Province / SubbasinMainstem/Systemwide / Systemwide
Short descriptionProvide biological and genetic information on O. nerka and O. tshawytscha samples collected throughout the Snake and Columbia Basins to be used in the overall recovery of endangered Snake River sockeye salmon and threatened Salmon River chinook salmon.
Target speciesSockeye salmon (Oncorhynchus nerka) and chinook salmon (Oncorhynchus tshawytscha)
Project location
LatitudeLongitudeDescription
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription

Section 2. Past accomplishments

YearAccomplishment
1997 Identification of a listed sockeye in creel samples and straying sockeye at Manchester
1998 Completion of mitochondrial DNA data set for sockeye
1999 Completion of preliminary nuclear DNA data set for sockeye.
See project history Section 8d for further detail between 1990-1995.

Section 3. Relationships to other projects

Project IDTitleDescription
9107100 Snake River Sockeye Salmon Habitat (Sho-Ban Tribes) This project provides genetic information for habitat and resource management. The 9107100 project provides tissue samples for this project.
9107200 Redfish Lake Sockeye Salmon Captive Broodstock (IDFG) This project provides genetic information on an endangered population. The 9107200 project provides tissue samples for this project.
9204000 Redfish Lake Sockeye Salmon Captive Broodstock Rearing and Research (NMFS) This project provides genetic information on an endangered population. The 9204000 project provides tissue samples for this project.
9606700 Manchester Spring Chinook Broodstock Project (NMFS) This project will provide genetic information for three threatened populations of chinook salmon. The 9606700 project will provide tissue samples for this project.
9700100 Captive Rearing Initiative for Salmon River Chinook Salmon (IDFG) This project will provide genetic information for three threatened populations of chinook salmon. The 9700100 project will provide tissue samples for this project.
9801002 Captive Rearing Initiative for Salmon River Chinook Salmon-M (IDFG) This project will provide genetic information for three threatened populations of chinook salmon. The 9801002 project will provide tissue samples for this project.

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2000 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Planning and Design phase

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2000 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Construction and Implementation phase

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2000 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2000 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Monitoring and Evaluation phase

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2000 cost
Personnel M. Powell, Principle Investigator Senior Scientific Aide Graduate Research Assistant $70,450
Fringe M. Powell @ 28.5% Senior Scientifc Aide @ 34.5% Graduate Research Assistant @ 1% $16,360
Supplies chemicals, pipet tips, tubes, gloves, nucleotide primers, etc. $8,400
Operating equipment service and calibration, UPS shipping, Federal Express, long distance calls/faxing. $2,100
Travel 1 professional meeting (AFS) and 12 monthly T.O.C. meetings $2,800
Indirect on campus indirect cost rate @44.7% $44,749
Other none $0
$144,859
Total estimated budget
Total FY 2000 cost$144,859
Amount anticipated from previously committed BPA funds$0
Total FY 2000 budget request$144,859
FY 2000 forecast from 1999$0
% change from forecast0.0%
Cost sharing
OrganizationItem or service providedAmountCash or in-kind
Other budget explanation

Schedule Constraints: None except the amount of work is dependent on collections of returning sockeye and chinook.


Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fund
Date:
Jun 15, 1999

Comment:

Recommendation: Fund. OK for a multi-year review cycle, review in FY2002 for reporting of results.

Comments: This proposal is well written and addresses the genetic variation in Columbia River sockeye salmon, particularly in the listed stock (Redfish Lake) and its captive breeding program, plus the impact of captive rearing on three listed chinook salmon populations. These populations are severely depressed and require careful genetic monitoring to maintain the remaining genetic variation. The genetic techniques being applied are appropriate and continue to be developed to increase the resolution of genetic differences. This is clearly high priority work that warrants continued funding and is an example of a strong proposal. One concern identified, though, was that the project was apparently started in 1990. In general, it appears that the progress to date has not been adequately reported, especially in peer-reviewed publications and reports. While this concern merits investigation or clarification, the reviewers did note that publications have been recently submitted.


Recommendation:
Fund
Date:
Aug 20, 1999

Comment:


Recommendation:
Date:
Aug 20, 1999

Comment:

Criteria all: Met? yes - This ongoing project is changing direction and now including chinook. Question if similar straying studies are proposed for chinook as this could expand the project significantly.
Recommendation:
Date:
Aug 20, 1999

Comment:

This project is important and should continue. We recommend funding at a reduced rate in order to meet other management priorities within this sub region.
Recommendation:
Fund at current levels
Date:
Mar 1, 2000

Comment:

(d) captive propagation - (Projects 9009300, 9107200, 9204000, 9305600, 9606700, 9801001, and 9801006 - various sponsors)

Issue: 1) Has NMFS developed a prioritization schedule for captive brood projects as previously requested by the Council, and; 2) if the answer is yes, does the Council find the interim standards for use of captive brood strategies adequately responsive to the Council's concerns that these projects are costly, and the feasibility of the technology is unproven?

Past Council Treatment: In its Fiscal Year 1998 and Fiscal Year 1999 recommendations, the Council expressed several categorical concerns with the captive broodstock projects being proposed for funding: (1) the projects are expensive, (2) they appear to be proliferating, (3) the feasibility of the technology had not been adequately reviewed, and, (4) an underlying question related to the question of whether these projects are primarily "ESA projects" or projects that are consistent with and part of the program funded by Bonneville. In the end, the Council recommended that existing captive broodstock programs be funded, but it called upon NMFS to work with the other anadromous fish managers to develop a set of interim standards for the application of captive broodstock technology. The Council advised that its continued funding support for the NMFS systemwide project was contingent on a set of acceptable standards being developed. The Council also stated that it would not recommend funding for any new captive broodstock projects absent an emergency, without those standards. The Council also stated its intention to require captive broodstock projects to follow the interim 3-step review process for artificial production projects. The Council has also asked that NMFS prioritize captive broodstock projects and provide that schedule to the Council to assist in the review of the budget proposals.

In February of this year, NMFS submitted the interim standards report requested by the Council. The region is using these interim standards as temporary guidance in discussions about captive propagation. The standards were incorporated into the guidelines and performance standards developed in the preservation/conservation purpose of artificial production under the APR process, and are, therefore, consistent with the principles, policies, and purposes as described in the report and recommendations.

Council Recommendation: To date, the Council has not received a prioritization of likely target populations and intervention programs to form a basis for programmatic and budget planning. Therefore, funding levels for existing programs should be held at current levels pending that prioritization. If and when the prioritization is provided, a review of these captive brood programs for consistency with APR report policies and standards must be conducted before additional funds are allocated to these programs or new programs. The Council recommends that projects 9009300, 9107200, 9204000, 9305600, 9606700, 9801001 and 9801006 be funded with the following conditions:


Recommendation:
Fund
Date:
Mar 1, 2000

Comment:

[Decision made in 9-22-99 Council Meeting]; Funding level determination for BPA
REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$126,000 $98,000 $98,000

Sponsor comments: See comment at Council's website