FY 2002 Mountain Snake proposal 200206800

Section 1. Administrative

Proposal titleEvaluating stream habitat using the Nez Perce Tribe Fisheries/Watershed Watershed Monitoring and Evaluation Plan
Proposal ID200206800
OrganizationNez Perce Tribe Fisheries and Watershed (NPT)
Proposal contact person or principal investigator
NameRebecca A. Lloyd
Mailing addressNez Perce Tribe Fisheries Watershed, P.O. Box 365 Lapwai, ID 83540
Phone / email2088437144 / rebeccal@nezperce.org
Manager authorizing this projectIra Jones
Review cycleMountain Snake
Province / SubbasinMountain Snake / Clearwater
Short descriptionWME will implement habitat surveys and fish snorkel stations in order to characterize quantity and quality of available spawning and rearing habitat and will evaluate stream response to watershed restoration and/or management activity.
Target speciesspring chinook, Snake River summer steelhead (ESU), bull trout (ESA), westslope cutthroat
Project location
LatitudeLongitudeDescription
45.56 -115.36 The monitoring and evaluation program will extend throughout the Mountain Snake Province. In the initial year, monitoring will occur in the Lochsa Drainage, Middle Fork of the Clearwater, South Fork of the Clearwater, and Salmon River.
Reasonable and Prudent Alternatives (RPAs)

Sponsor-reported:

RPA
RM&E RPA Action 182
RM&E RPA Action 183
RM&E RPA Action 190

Relevant RPAs based on NMFS/BPA review:

Reviewing agencyAction #BiOp AgencyDescription
NMFS Action 183 NMFS Initiate at least three tier 3 studies (each necessarily comprising several sites) within each ESU (a single action may affect more than one ESU). In addition, at least two studies focusing on each major management action must take place within the Columbia River basin. The Action Agencies shall work with NMFS and the Technical Recovery Teams to identify key studies in the 1-year plan. Those studies will be implemented no later than 2003.
NMFS/BPA Action 183 NMFS Initiate at least three tier 3 studies (each necessarily comprising several sites) within each ESU (a single action may affect more than one ESU). In addition, at least two studies focusing on each major management action must take place within the Columbia River basin. The Action Agencies shall work with NMFS and the Technical Recovery Teams to identify key studies in the 1-year plan. Those studies will be implemented no later than 2003.

Section 2. Past accomplishments

YearAccomplishment

Section 3. Relationships to other projects

Project IDTitleDescription
199607703 Wawaatamnima[Fishing Creek (Squaw)] to Imnaamatnoon [Legendary Bear (Papoose)] Requires a larger scale monitoring effort to evaluate stream response and monitor water quality compliance.
199607702 Lolo Creek Requires a larger scale monitoring effort to evaluate stream response, monitor water quality compliance, and support TMDL development.
199901700 Lapwai Creek Requires a larger scale monitoring effort to evaluate project effectiveness, monitor water quality compliance, and support. TMDL development.
199901600 Big Canyon Requires a larger scale monitoring effort to evaluate project effectiveness, monitor water quality compliance, and support TMDL development.
199607705 McComas Meadows/Meadow Creek Relate the project area stream response to overall stream condition, evaluate fish abundance, and monitor water quality compliance.
4494 Newsome Creek Requires a larger scale monitoring effort to evaluate project effectiveness, monitor water quality compliance, and support TMDL development.
199809802 Salmon Supplementation in Idaho Rivers Data collected for both studies will be coordinated. Monitoring trends in watershed condition will clarify interpretation of fish population data collected in ISS study.
198335003 Nez Perce Tribal Hatchery Monitoring and Evaluation Monitoring will occur in streams designated for hatchery stock outplants. Data collected in streams will help determine the impacts of habitat quality available to hatchery outplants.

Section 4. Budget for Planning and Design phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Determine the quality and extent of habitat available to anadromous and resident fishes. a. During first year, select ten streams for monitoring. Six streams should be in areas of ongoing or completed restoration activity and four streams should be located in proposed project areas. In subsequent years six new streams will be added. On going $4,538
1 b. Select streams to monitor in three reference watersheds. On going $4,538
1 f. Work each year with Nez Perce Tribe Fisheries Research division to coordinate fish distribution snorkeling with other existing fish population monitoring. On going $8,286
1 g. Monitor fish distribution and relative density in lowest reach at the time of stream habitat surveys. On going $19,366
1 h. Coordinate monitoring locations and survey plans with the Clearwater National Forest, Nez Perce National Forest, Payette National Forest, Tribal programs, state agencies, and other stakeholders responsible for stream monitoring. On going $23,322
1 i. Develop cost-share or challenge contracts where appropriate. On going $11,029
2. Evaluate effectiveness of restoration projects for producing long-term watershed improvements. a. Locate one reach in each monitored stream downstream of restoration activity to capture cumulative effects. On going $6,985
3. Use the data and trends developed to provide guidance for subbasin planning and future land management decisions. c. Coordinate with fellow managers to adapt management activity in watersheds with streams not meeting accepted standards. On going $9,681
4. Provide for office and clerical support. a. Support office staff who will help manage finances and with data reporting. On going $16,083
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Determine the quality and extent of habitat available to anadromous and resident fishes. 2003 2006 $331,100
2. Evaluate effectiveness of restoration projects for producing long-term watershed improvements. 2003 2006 $32,400
2. Evaluate effectiveness of restoration projects for producing long-term watershed improvements. 2003 2006 $45,300
4. Provide for office and clerical support. 2003 2006 $74,900
Outyear budgets for Planning and Design phase
FY 2003FY 2004FY 2005FY 2006
$110,400$119,800$123,400$130,100

Section 5. Budget for Construction and Implementation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
1. Determine the quality and extent of habitat available to anadromous and resident fishes. Resolve uncertainties in juvenile abundances. c. Monument and survey three reaches in every monitored stream according to procedures Watershed Recovery Monitoring Plan. On going $88,161 Yes
1 d. Install and maintain gauging stations, suspended sediment samplers, and temperature probe where this data is required to assess watershed condition. This is a project specific procedure and will be coordinated with other management agencies. On going $27,446
1 e. Train survey crew. On going $13,310
2. Evaluate effectiveness of restoration projects for producing long-term watershed improvements. b. Map locations of all management and restoration activity within each watershed in order to evaluate where the impacts of these activities will be reflected in the stream. On going $32,090
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
1. Determine the quality and extent of habitat available to anadromous and resident fishes. 2003 2006 $600,700
2. Evaluate effectiveness of restoration projects for producing long-term watershed improvements. 2003 2006 $127,200
Outyear budgets for Construction and Implementation phase
FY 2003FY 2004FY 2005FY 2006
$169,800$160,400$193,300$204,500

Section 6. Budget for Operations and Maintenance phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
Outyear budgets for Operations and Maintenance phase

Section 7. Budget for Monitoring and Evaluation phase

Task-based budget
ObjectiveTaskDuration in FYsEstimated 2002 costSubcontractor
2. Evaluate effectiveness of restoration projects for producing long-term watershed improvements. c. Compile data collected for project level monitoring with stream habitat survey data and fish population data. On going $35,924
2 d. Evaluate data collected on parameters by applying descriptive statistics and regression analysis to trend data. On going $8,286
2 e. Develop database and GIS layers to store and present data on each monitored parameter. On going $42,948
2 f. Coordinate with StreamNet to make database and maps accessible through queries of the StreamNet system. On going $20,299
3. Use the data and trends developed to provide guidance for subbasin planning and future land management decisions. a. Apply the Coarse Screening Process to determine whether habitat is recovering. Streams must show a five-year trend of improving habitat. On going $4,408
3 b. Annually compile a list of monitored streams considered in unsatisfactory condition. Streams not in compliance with water quality and habitat quality standards accepted by CRITFC will be judged in unsatisfactory condition. On going $4,408
Outyear objectives-based budget
ObjectiveStarting FYEnding FYEstimated cost
2. Evaluate effectiveness of restoration projects for producing long-term watershed improvements. 2003 2006 $495,000
3. Use the data and trends developed to provide guidance for subbasin planning and future land management decisions. 2003 2006 $537,200
Outyear budgets for Monitoring and Evaluation phase
FY 2003FY 2004FY 2005FY 2006
$124,500$124,700$140,300$147,800

Section 8. Estimated budget summary

Itemized budget
ItemNoteFY 2002 cost
Personnel FTE: 4, Seasonals: 4 $205,511
Fringe 30% taxed employees, 20% Nontaxed, 10% Seasonal $44,024
Supplies $2,831
Travel Includes training courses. $12,694
Indirect 20.9% $55,398
Capital Includes GPS unit, computer software and hardware, and survey supplies. $34,000
Subcontractor Stream habitat surveys $20,000
Other Vehicles $6,650
$381,108
Total estimated budget
Total FY 2002 cost$381,108
Amount anticipated from previously committed BPA funds$0
Total FY 2002 budget request$381,108
FY 2002 forecast from 2001$0
% change from forecast0.0%
Cost sharing
OrganizationItem or service providedAmountCash or in-kind
Other budget explanation

Exact cost-sharing on stream surveys between the USFS and the Tribe will be determined on a stream by stream. Decisions will be made on annual basis.


Reviews and recommendations

This information was not provided on the original proposals, but was generated during the review process.

Recommendation:
Fundable only if response is adequate
Date:
Sep 28, 2001

Comment:

Response needed. The Watershed Monitoring and Evaluation Plan would be implemented by the Fisheries/Watershed Department to evaluate habitat quality and water quality in all streams throughout the Mountain Snake Province where the Nez Perce Tribe has ongoing or proposed watershed restoration projects. Department staff would also monitor "fish metrics" (species, age class, and size range) in the lowest reach of each monitored stream.

The proposal states that "this extensive data collection effort would support the effort to validate the Ecological Diagnosis Treatment model (EDT)" and "much of the subbasin scale restoration recommendations developed by the FWP will be based on the EDT model". However reviewers did not see further mention of how that might occur, or of the staff that would be involved, in this or any other proposal currently being reviewed in the Province.

Most of the reviewers have been involved in the past in efforts similar to that proposed (the US Forest Service GAWS program, for example) where a set of standardized habitat attributes was monitored over large spatial and temporal scales in an attempt, in part, to use those attributes in lieu of, or as a surrogate for, fish abundance data. Those programs quietly terminated after several years, leaving behind mountains of data but little else to remember them by. In the view of the panel, there is a strong likelihood that the proposed project would have a similar fate.

Reviewers have been involved in some very fruitful habitat-based study, such as the Habitat Quality Index in Wyoming, where combinations of physical/chemical stream attributes were developed to predict trout abundance. However that work was successful because it focused on establishing which biological factors were indeed determinants of fish abundance in that environment.

Reviewers are concerned by the perceived amount of separation here between habitat restoration staff and the fish monitoring staff to which they are "tiered." Although responsibility for evaluation should lie outside the on-ground habitat projects, the skill of habitat restoration personnel depends on their having strong working knowledge of what the fish require. They must continually increase that knowledge by being personally involved, seeing what aspects of habitat management worked and what did not. Please address reviewers' concern that this plan would widen, not narrow, the knowledge gap by failing to improve the staff's understanding of limiting factors. Also, are not fish the currency of success, especially where the habitat is largely underseeded?


Recommendation:
High Priority
Date:
Nov 30, 2001

Comment:


Recommendation:
Fund
Date:
Dec 21, 2001

Comment:

Fundable in part to develop a more detailed statistical design and with the assistance of a senior biometrician that is reviewed and endorsed by independent scientific reviewers (perhaps by the ISRP). Also required for the above review is a justification of the choice of each physical parameter chosen to monitor. This proposal reflects much thought in some portions but does not describe an adequate comprehensive M and E plan for habitat monitoring in the Clearwater, although the need for such a project is substantial. A comprehensive M&E program for habitat monitoring should include common probabilistic procedures and data collection protocols throughout the Mountain Snake and Blue Mountain Provinces, and indeed the entire Columbia Basin.

As proposed, the Watershed Monitoring and Evaluation Plan would be implemented by the Fisheries/Watershed Department to evaluate habitat quality and water quality throughout the Mountain Snake Province where the Nez Perce Tribe has ongoing or proposed watershed restoration projects. Department staff would also monitor "fish metrics" (species, age class, and size range) in the lowest reach of each monitored stream. In the Clearwater subbasin the plan would be implemented in four of the eight assessment units where projects exist or are planned. Apparently ten streams would be selected for the first year's monitoring (together with some reference streams), and then six monitoring streams would be added annually.

This is the core project for the NPT habitat projects in both Clearwater and Salmon subbasins, but some detail is understandably in the process of evolution, and hence reviewers would need to take on faith that this would be well implemented. A specific concern is that the proposed protocol would not effectively assess the success of many habitat projects; for example, the possible migration of "new" fish above a newly replaced culvert would not be monitored.

A major issue involves what physical habitat parameters should be systematically gathered that (a) show how the habitat has changed after, say, riparian vegetation is re-established and (b) indicate that important fish habitat attributes have (or haven't) changed. Proponents seem only to have thought about category (a), and seem to dismiss the need to include category (b) attributes because they "link" to existing fish enumeration (from other monitoring projects). Reviewers disagree that there is adequate fish linkage. Also, reviewers would like to see a justification for the inclusion of the nine physical habitat parameters listed in objective 2, task D.

The proposal states that "this extensive data collection effort would support the effort to validate the Ecological Diagnosis Treatment model (EDT)" and "much of the subbasin scale restoration recommendations developed by the FWP will be based on the EDT model". However reviewers did not see further mention of how that might occur, or of the staff that would be involved, in this or any other proposal currently being reviewed in the Province. The proposal's response indicates that Watershed staff have no plans to be directly involved in the modeling effort

The ISRP emphasizes our support of the proponents of projects in the Mountain Snake Province to work with all Idaho, Oregon, Washington, and Montana Provinces to develop compatible monitoring and evaluation procedures with common field procedures and probabilistic site selection for the entire Columbia River Basin. A proven model for this effort is the Oregon Plan for Salmon and Watersheds Monitoring Program.

The implementation of such a high-level coordinated plan throughout the Columbia River Basin would likely be an unprecedented advance in research and a distinct benefit to the resource. Collocation of study sites for fish counts, aquatic habitat, and water quality would enhance the region's ability to draw meaningful conclusions from the array of M&E projects currently underway. The Nez Perce Tribe and the Idaho Department of Fish & Game could have lead roles in development of such a plan (see final reviews and the responses to the initial ISRP reviews of Projects 28051"Assess and Monitor Steelhead in the Middle Fork Salmon River Subbasin" and 199107300"Idaho Natural Production Monitoring and Evaluation").

The proponents should interact closely with Project 199801600 in the Columbia Plateau (Jim Ruzycki and Richard Carmichael, ODFW, "Monitor Natural Escapement and Productivity of John Day Basin Spring Chinook Salmon." ODFW revised this proposal to create a comprehensive plan to include all monitoring and evaluation for all anadromous salmonid lifestages and habitats in the John Day Basin. The M&E program in the John Day Basin is apparently developing as a model for the Oregon section of the Columbia Basin and is being carefully reviewed by agencies in Washington.

The ISRP recommends that the proponents consider using aquatic habitat data collection protocols recommended in Johnson et al. (2001) (Johnson, D. H., N. Pittman, E. Wilder, J. A. Silver, R. W. Plotnikoff, B. C. Mason, K. K. Jones, P. Roger, T. A. O'Neil, C. Barrett. 2001. Inventory and Monitoring of Salmon Habitat in the Pacific Northwest - Directory and Synthesis of Protocols for Management/Research and Volunteers in Washington, Oregon, Idaho, Montana, and British Columbia. Washington Department of Fish and Wildlife, Olympia, Washington. 211pp).


Recommendation:
Date:
Feb 1, 2002

Comment:

Statement of Potential Biological Benefit to ESU
Possible indirect benefit. Data collected are intended to document the extent and quality of spawning and rearing habitat.

Comments
Although consistent with the RPA, there is much unused inventory data in state and federal files. Does this effort advance beyond or mesh with existing data? Until that question is answered it is uncertain that this project will result in either direct or indirect benefits.

Already ESA Req? No

Biop? Yes


Recommendation:
C
Date:
Feb 11, 2002

Comment:

Do not recommend. The project could be reconsidered when a regional RM&E plan is completed and the need for the project can be properly assessed.

BPA RPA RPM:
--

NMFS RPA/USFWS RPM:
183


Recommendation:
Fund
Date:
Apr 19, 2002

Comment:

Council recommendation: The Council is recommending funding for this new project as one of the few that NMFS states responds to RPA 183 pertaining to monitoring and evaluation. The funding levels are less than requested, and set forth in Table 1.

Although the ISRP had substantial comment on this proposal, none of it was particularly critical in nature. Rather, the ISRP seemed impressed with the proposal's concepts, and spent much time suggesting that the work be coordinated in some way with other similar work taking place in the basin. In addition, this sort of project, which attempts to measure responses to varied habitat restoration strategies is investigated, could be important in advancing the thinking in the province and region on developing tiered monitoring and evaluation, and the ability and desirability of using "index" areas for monitoring and evaluation as opposed to full blown M&E effort for each project. This is an area that the ISRP has encouraged the region to further explore in past programmatic recommendations.

The Council recommends funding this new ESA related work. The sponsor has agreed to work with the ISRP to develop a more detailed statistical design and to address the ISRP's questions and comments about the choice of "physical habitat parameters" ("category a and b" issues noted) on page 94 of the final ISRP report. The Council recommends that funding proceed to allow the sponsor to proceed with the additional design work and response to the ISRP about the choice of habitat parameters, and that additional implementation activities proceed after the ISRP reports that these issues have been sufficiently resolved.


Recommendation:
Fund
Date:
Jun 13, 2002

Comment:

Fund with following conditions: Statement of Work and budget will be developed in coordination with NMFS and BPA to develop a statistical design to meet RPA 183 and potentially RPA 180. Project management will require adherence to specific timelines (at least annually) for analysis and reporting to assess needs for project modifications and scope change. Project may be modified after the Regional RM&E plan is developed. Final funding level will be determined in contract negotiations.
Recommendation:
Fund
Date:
Sep 20, 2003

Comment:

90K added from 199706000. Contracted in June.
Recommendation:
Date:
Sep 20, 2003

Comment:


REVIEW:
NW Power and Conservation Council's FY 2006 Project Funding Review
Funding category:
expense
Date:
May 2005
FY05 NPCC start of year:FY06 NPCC staff preliminary:FY06 NPCC July draft start of year:
$213,831 $303,831 $303,831

Sponsor comments: See comment at Council's website